Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5736 129 1e-24 seq6446 127 5e-24 seq2450 120 7e-22 seq147 105 2e-17 seq2282 102 2e-16 seq6235 87.8 4e-12 >seq5736 Length=2708 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||| || || || | || ||||| |||||| Sbjct 2652 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAG 2593 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || ||||| | ||||| ||||| || || ||||||||| |||||| | Sbjct 2592 ATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTTCTGCTTCACGGCT 2533 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | |||| || || |||||||| ||||| ||||||||||| || ||||||||| Sbjct 2532 TGGATGGTATCGGAGGACTCAACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACG 2473 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2472 AAGATCTGCAT 2462 >seq6446 Length=1463 Score = 127 bits (140), Expect = 5e-24 Identities = 246/355 (69%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 72441 GGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTAC 72500 ||| | || | ||||||||| || || ||||| ||||| || || || || || ||| Sbjct 1057 GGAGACGTCCGAGAAATTCCCCAAACCGAAAAAACTCCCTTCTACCCCCGCTCTCCCTAC 998 Query 72501 GG-TGTTGCAAAGTTGTACGCTTATTGGATCTGTAA-AAATTACCGTGAGTCGTATAACA 72558 | ||| |||||| | || ||||||| ||| ||| ||||| || | ||| | Sbjct 997 GCATGTGCCAAAGTCTTTTCCT-ATTGGAT-TGTCGTAAACTACCGAGAAGCCTATGGAA 940 Query 72559 TGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCG 72618 || ||| | ||| |||| |||||||||||||| || | || || | | |||| Sbjct 939 TGCATGGTTCCAATGGTATTTTATTCAATCACGAGAGCCCAAGGAGGGGTCCTACTTTCG 880 Query 72619 TGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAA-TGCATG 72677 |||| | ||| | || | || ||| | || || || || | | | | || || Sbjct 879 TGACGAGGAAAGTGACCAGGGGGGTGGTGAGGATCG-CAGCGGGGACTCAGGAGTGTTTG 821 Query 72678 TATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 72737 || | || ||| | ||| | | |||||||||||| |||| ||||| || || || || Sbjct 820 TACATGGGAAATTTGGATTCGAGAAGAGATTGGGGGCATGCTAAGGAGTATGTCGAGGCG 761 Query 72738 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGA 72792 |||||||||||||||||||| |||| || ||||||| |||||||| ||||||| Sbjct 760 ATGTGGTTGATGCTGCAACAGGATAAGCCCGATGACTTTGTGATTGGGACAGGGA 706 >seq2450 Length=27238 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||| ||||| || | || || || |||||| Sbjct 9314 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 9255 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || ||||| | ||||| ||||| || || || || ||| ||||||| | Sbjct 9254 ATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATCTTCTGTTTCACGGCT 9195 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | |||| || || |||||||| ||||| ||||| ||||| || ||||||||| Sbjct 9194 TGGATGGTATCGGAGGACTCAACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACG 9135 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 9134 AAGATCTGCAT 9124 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||| ||||| || | || || || |||||| Sbjct 8858 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAG 8799 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || ||||| | ||||| ||||| || || || || ||| ||||||| | Sbjct 8798 ATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATCTTCTGTTTCACGGCT 8739 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | ||| || || |||||||| ||||| ||||||||||| || ||||||||| Sbjct 8738 TGGATGGTGTCGGAAGACTCGACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACG 8679 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 8678 AAAATTTGCAT 8668 >seq147 Length=786 Score = 105 bits (116), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 288291 GATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG 288350 ||| || || |||| || ||||| ||||| || | || || || |||||||||| || Sbjct 2 GATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCG 61 Query 288351 CTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA 288410 ||||| | || || ||||| || || || || ||| ||||||| || || | Sbjct 62 TTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGAATCTTCTGTTTCACGGCTTGGATGGT 121 Query 288411 ATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 ||| || || |||||||| ||||| ||||||||||| || ||||||||||| || || Sbjct 122 GTCGGAAGACTCGACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTG 181 Query 288471 CAT 288473 ||| Sbjct 182 CAT 184 >seq2282 Length=5406 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 ||||| ||||| || | || || || |||||||||| || ||||| | ||||| Sbjct 2 GTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATA 61 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || || ||||||||| |||||| || || | ||| || || |||||| Sbjct 62 CCTTCCTTGTCTTGGATTTTCTGTTTCACAGCTTGGATGGTGTCGGAAGACTCGACTTCG 121 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| || |||| ||| || ||||| |||||||| Sbjct 122 AGAGTGATCGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 165 >seq6235 Length=3334 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || |||| || ||||| || || || | || || || |||||||||| || ||||| Sbjct 1607 TAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGG 1548 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 | ||||||||||| || || || || ||| || ||||| || || | |||| Sbjct 1547 TCAGGAGGGATTCCTTCCTTGTCTTGAATCTTTTGC-TTCACAGCTTGGATGGTATCGGA 1489 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || |||||||| || |||| ||| || ||||| || ||||| Sbjct 1488 GGACTCGACTTCGAGAGTAATCGTCTTTCCCGTCAAAGTTTTCACGAAAATTTGCAT 1432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179513398490062