Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6446 127 5e-24 >seq6446 Length=1463 Score = 127 bits (140), Expect = 5e-24 Identities = 246/355 (69%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 68430 GGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTAC 68489 ||| | || | ||||||||| || || ||||| ||||| || || || || || ||| Sbjct 1057 GGAGACGTCCGAGAAATTCCCCAAACCGAAAAAACTCCCTTCTACCCCCGCTCTCCCTAC 998 Query 68490 GG-TGTTGCAAAGTTGTACGCTTATTGGATCTGTAA-AAATTACCGTGAGTCGTATAACA 68547 | ||| |||||| | || ||||||| ||| ||| ||||| || | ||| | Sbjct 997 GCATGTGCCAAAGTCTTTTCCT-ATTGGAT-TGTCGTAAACTACCGAGAAGCCTATGGAA 940 Query 68548 TGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCG 68607 || ||| | ||| |||| |||||||||||||| || | || || | | |||| Sbjct 939 TGCATGGTTCCAATGGTATTTTATTCAATCACGAGAGCCCAAGGAGGGGTCCTACTTTCG 880 Query 68608 TGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAA-TGCATG 68666 |||| | ||| | || | || ||| | || || || || | | | | || || Sbjct 879 TGACGAGGAAAGTGACCAGGGGGGTGGTGAGGATCG-CAGCGGGGACTCAGGAGTGTTTG 821 Query 68667 TATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 68726 || | || ||| | ||| | | |||||||||||| |||| ||||| || || || || Sbjct 820 TACATGGGAAATTTGGATTCGAGAAGAGATTGGGGGCATGCTAAGGAGTATGTCGAGGCG 761 Query 68727 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGA 68781 |||||||||||||||||||| |||| || ||||||| |||||||| ||||||| Sbjct 760 ATGTGGTTGATGCTGCAACAGGATAAGCCCGATGACTTTGTGATTGGGACAGGGA 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102748175166150