Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2282 93.3 5e-14 seq5736 89.7 6e-13 seq1860 87.8 2e-12 >seq2282 Length=5406 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| ||||| || | || |||||||| || |||||||| | ||||| || | Sbjct 179 CGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCA 238 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| || | ||| || ||||| | || | | |||||| Sbjct 239 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTG 298 Query 42114 TCCATGATTTTTTGTTTGA--GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || |||||| ||||| | || | | | |||||| || || || || | || | Sbjct 299 TCTTGGATTTTCTGTTTCACGGCTTGG--ATGGTGTCGGAGGACTCGACCTCAAGGGTAA 356 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || ||||| | || ||||||||||| ||||| Sbjct 357 TTGTCTTTCCCGTCAAAGTTTTTACAAAGATCTGCAT 393 >seq5736 Length=2708 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| ||||| || | || |||||| || || |||||||| | ||||| || | Sbjct 2448 CGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCA 2389 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || | ||| || ||||| | || | | |||||| Sbjct 2388 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTG 2329 Query 42114 TCCATGATTTTTTGTTTGA--GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || |||||| || || | || | | | |||||| || || || |||| |||| Sbjct 2328 TCTTGGATTTTCTGCTTCACGGCTTGG--ATGGTGTCGGAGGACTCGACTTCGAGAGTGA 2271 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || || || || || ||||||||||| Sbjct 2270 TAGTCTTTCCTGTGAGGGTTTTGACGAAGATTTGCAT 2234 >seq1860 Length=4765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || |||||||| | ||||| || | || || |||||||| |||||||| Sbjct 2451 TCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAG 2510 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGA--GCG 42135 || | ||| || ||||| | || | || |||||||| |||||| || || | || Sbjct 2511 ATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACAGCT 2570 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| || || || || | || ||||| || ||||| | || || | Sbjct 2571 TGG--ATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGTCAAAGTTTTCA 2628 Query 42196 CAAAGATTTGCATTTT 42211 | ||||||||||| || Sbjct 2629 CGAAGATTTGCATGTT 2644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543149454597360