Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2450 98.7 7e-16 seq1860 98.7 7e-16 seq2282 95.1 9e-15 seq7632 91.5 1e-13 seq1292 91.5 1e-13 seq1856 89.7 4e-13 >seq2450 Length=27238 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || || || |||||||||||| ||| | | |||| || Sbjct 7420 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCG 7361 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||| || |||||||| ||||| ||||||||||| | Sbjct 7360 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGA 7301 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || || || || || || | || || || | |||||| || || Sbjct 7300 ATTTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCCAGGGTAATTGTCTTT 7241 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||||||||| ||||| ||||| Sbjct 7240 CCCGTCAAAGTTTTTACGAAAATCTGCAT 7212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || ||||| || || || |||||||||||| ||| | | |||| Sbjct 9107 AAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCC 9048 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||||||| | ||||| || |||||||| ||||| ||||||||||| Sbjct 9047 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCT 8988 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| || || || || || ||| || || || | |||||| || Sbjct 8987 TGAATTTTTTGCTTGACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATTGTC 8928 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| |||||| || || || |||||| Sbjct 8927 TTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 8895 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || || ||||| |||||||||||| ||| | | |||| || Sbjct 7876 ACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCA 7817 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||| || |||||||| || || ||||||||||| | Sbjct 7816 AGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGA 7757 Query 15088 A--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| || || || || || || | || || || | |||||| || | Sbjct 7756 ATCTTTTGC--TTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATAGTCT 7699 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| |||||| || |||||||||||| Sbjct 7698 TTCCCGTCAAAGTTTTCACGAAAATTTGCATA 7667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| || || || |||||||||||| ||| | | |||| Sbjct 9563 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCC 9504 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||||||| | ||||| || |||||||| || || ||||||||||| Sbjct 9503 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 9444 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || ||| || || |||||| || || || | || || || Sbjct 9443 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACTTCGAGAGTGATAGTC 9384 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || ||||| || || || |||||| Sbjct 9383 TTACCGGTGAGCGTTTTGACGAAGATCTGCATA 9351 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || ||||| |||||||||||| || | | | || || Sbjct 7648 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCCTCG 7589 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || ||| | ||||| || |||||||| || || ||||||||||| Sbjct 7588 AGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 7529 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| || || || || ||| || || || | |||||| || || Sbjct 7528 ATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTTT 7469 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||||||| |||||||||||| Sbjct 7468 CCCGTCAAAGTTTTTACGAAAATTTGCATA 7439 >seq1860 Length=4765 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || ||||| |||||||||||| ||| | | | || || Sbjct 2433 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 2492 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||| || |||||||| || || ||||||||||| Sbjct 2493 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 2552 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| || || |||||| || || || | ||||||||| || Sbjct 2553 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2612 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || |||| |||||| || || |||||||| || Sbjct 2613 CCCGTCAAAGTTTTCACGAAGATTTGCATGTT 2644 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || ||||| |||||||||||| ||| | | | || || Sbjct 1749 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 1808 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||| || |||||||| || || ||||||||||| Sbjct 1809 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 1868 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| || || |||||| || || || | ||||||||| || Sbjct 1869 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 1928 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| |||||| || || || |||||| Sbjct 1929 CCCGTCAAAGTTTTCACGAAGATCTGCATA 1958 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || ||||| || || ||||| || || || |||||||||||| || | | ||||| Sbjct 1974 AAGACTAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTCCGGCCGTCT 2033 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || || ||| | ||||| || |||||||| || || ||||||||||| Sbjct 2034 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATCCCTTCCTTGTCT 2093 Query 15085 CAAA--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 || |||||| || ||| || || || ||| || || || | |||||| | Sbjct 2094 TGAATCTTTTGC--TTCACAGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAG 2151 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || |||| |||||| || || || |||||| Sbjct 2152 TCTTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 2186 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || ||||| |||||||||||| ||| | | | || || Sbjct 2205 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 2264 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||| || |||||||| || || ||||||||||| Sbjct 2265 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 2324 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| || || |||||| || || || | ||||||||| || Sbjct 2325 ATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2384 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| |||||| || || || |||||| Sbjct 2385 CCCGTCAAAGTTTTCACGAAGATCTGCATA 2414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || ||||| || ||||| |||||||||||| ||| | | | || Sbjct 1518 AAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 1577 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||||||| | ||||| || |||||||| || || ||||||||||| Sbjct 1578 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCT 1637 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || ||| || || |||||| || || || | |||||| || Sbjct 1638 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATAGTC 1697 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| |||||| || || || |||||| Sbjct 1698 TTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 1730 >seq2282 Length=5406 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || ||||| || ||||| |||||||||||| ||| | | | || Sbjct 182 AAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCC 241 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||||||| | ||||| || |||||||| || || ||||||||||| Sbjct 242 TCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 301 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| || || || || ||| || || || | |||||| || Sbjct 302 TGGATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATTGTC 361 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| |||||||||||| || ||||| Sbjct 362 TTTCCCGTCAAAGTTTTTACAAAGATCTGCAT 393 >seq7632 Length=1044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| || || || |||||||||||| ||| | | ||||| Sbjct 687 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCT 746 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || || ||| | ||||| || |||||||| || || || |||||||| Sbjct 747 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTGTCT 806 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || || || ||||| || | || || || | |||||| || Sbjct 807 TGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGACTCGACCTCAAGGGTAATTGTC 866 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| |||||| || || || |||||| Sbjct 867 TTTCCCGTCAAAGTTTTCACGAAGATCTGCATA 899 >seq1292 Length=4421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| ||||| || || || |||||||||||| ||| | | ||||| Sbjct 268 AAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCT 209 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || || ||| | ||||| || |||||||| || || || |||||||| Sbjct 208 TCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTGTCT 149 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || || || || || || | || || || | |||||| || Sbjct 148 TGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTAATTGTC 89 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||||||||| || || |||||| Sbjct 88 TTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 56 >seq1856 Length=6291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || ||||| || || || |||||||||||| || | | ||||| Sbjct 6183 AAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCT 6124 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || || ||| | || | || ||||||||| ||||| ||||||||||| Sbjct 6123 TCCAATTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTGTCT 6064 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| || ||| || || |||||| | || || || | || || || Sbjct 6063 TGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATAGTC 6004 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || || |||||||| Sbjct 6003 TTACCGGTGAGGGTTTTGACGAAGATTTGCAT 5972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357351365534765