Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2332 105 8e-18 >seq2332 Length=5771 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 176817 ACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAA 176876 |||| || || ||||| |||||||||||| |||||| ||||| || |||||| | Sbjct 3068 ACTTTCCACGAAGAGGAAACACACCGTAGAAATCACGCCCAACAACCCCAAGACCACACA 3127 Query 176877 CTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTG 176936 |||| | || |||||||| || ||||| || || || || || || | | |||| | Sbjct 3128 CTGCCAACGTTTTCGCGGAGTCTCCCTCGGTGACAATCAGTGTGCATTCTGCAGAACTCG 3187 Query 176937 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGT 176979 | || ||||| ||||| ||||| |||| ||| ||||| ||||| Sbjct 3188 CTGTTCCCGCTTTGTTGGCATCATCCAGCTTTGGAATCCCAGT 3230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613435657391640