Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1292 84.2 2e-11 >seq1292 Length=4421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| ||||| || | ||| ||| || || || || ||||||| | | ||| | Sbjct 271 CGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCG 212 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||| || ||| | || || || || || || || | ||| | ||| || ||| Sbjct 211 TCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCCTCCTTG 152 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCT---ACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 || ||||| || || | || ||| | ||||| | || || || | ||| Sbjct 151 TCTTGGATTTTCTGCTTCA-CG--GCTTGGATGGTGTCAGAAGACTCGACCTCAAGGGTA 95 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || ||||| ||||||||||||||||||||||| Sbjct 94 ATTGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347330105053457