Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6235 129 2e-24 seq2450 125 3e-23 seq3361 93.3 2e-13 seq2332 87.8 7e-12 >seq6235 Length=3334 Score = 129 bits (142), Expect = 2e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| || || || |||||||| || || || || || Sbjct 1432 ATGCAAATTTTCGTGAAAACTTTGACGGGAAAGACGATTACTCTCGAAGTCGAGTCCTCC 1491 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||||| | || ||||| |||||||| ||||||||||| |||||||| ||| Sbjct 1492 GATACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGAATCCCTCCTGACCAA 1551 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTA 391225 ||||| || || ||| | || || || || || ||||| | ||| | | ||||| Sbjct 1552 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTA 1607 >seq2450 Length=27238 Score = 125 bits (138), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||| || || || ||||| || || || || || ||| Sbjct 7212 ATGCAGATTTTCGTAAAAACTTTGACGGGAAAGACAATTACCCTGGAGGTCGAGTCTTCT 7271 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| |||| | || |||||||||||||| |||||||| ||||| ||||| ||| Sbjct 7272 GACACCATCCAAGCCGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCCCCTGACCAA 7331 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| | || || || || || || || | ||| | | ||||| || Sbjct 7332 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 7391 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 7392 ATCCAGAAGGAATCTACTCTCCACTTGGT 7420 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| |||| || || || ||||| ||||| || || || || Sbjct 8896 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCCTCC 8955 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| |||| | || |||||||||||||| |||||||| ||||| ||||| ||| Sbjct 8956 GACACCATCCAAGCCGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCCCCTGACCAA 9015 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| | || || || || || || || | ||| | | ||||| || Sbjct 9016 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 9075 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || || ||||| || || Sbjct 9076 ATCCAGAAGGAGTCTACTCTCCACTTGGTCTT 9107 >seq3361 Length=2140 Score = 93.3 bits (102), Expect = 2e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| || |||||||||||||||||||| ||||| ||| |||| || | || ||| Sbjct 1815 GTTCCTGCCTATTTCAATGATGCACAACGATTGGCAACAAAAAATGCTGGTGAAATCGCT 1756 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||| || ||| | ||||| |||| || ||||| || |||||| | || ||||| Sbjct 1755 GGTTTGAAGGTTTTGAGAATTGTTAACGAGCCTACCGCTGCTGCTATGGCTTATGG 1700 >seq2332 Length=5771 Score = 87.8 bits (96), Expect = 7e-12 Identities = 200/291 (69%), Gaps = 25/291 (9%) Strand=Plus/Minus Query 364566 ATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATT-TTTTATGGAGCAAA 364624 ||||| ||| | |||||||| || || || || |||| ||| |||| | || Sbjct 2423 ATTCCTTCTGTCGTTGATGGGTTGAAGCCAGGCCAGCGAAAGATTCTTTTCT----CATG 2368 Query 364625 TTT-AAGAGG-ATTAGAAAAAG---ATCAAGTAAAAGTAGCTCAATT-AGCAGGTTTTGT 364678 ||| |||||| ||| ||| || |||||| || ||||| || ||| || | ||| Sbjct 2367 TTTCAAGAGGGATTTGAAGGAGGATATCAAG-----GTTGCTCAGTTGAGC-GGCTATGT 2314 Query 364679 ATCTGACCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAAT 364738 || || | || |||||||||||||||||||| | | | || |||| || Sbjct 2313 CTCCGAGAAGTCTGCGTATCATCACGGTGAGGCAAGCCTCCAGTCCACGATCGTTGGGAT 2254 Query 364739 GGCACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGG 364798 ||| ||||||||||| |||||||| || | || | || | |||| || |||||||| Sbjct 2253 GGCTCAAAATTTTGTCGGAAGTAACAACATGAACCTCCTCCATCCAAGCGGTCAATTTGG 2194 Query 364799 AAGTCGAGT--AA--TGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTT 364845 || || | || ||||||| |||||||| || ||||||||||||| Sbjct 2193 AACCCGTCTGCAAGGTGGGAGG----GATTCTGCAAGTCCACGTTATATTT 2147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975482246701532