Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1840 203 2e-46 seq3361 89.7 4e-12 >seq1840 Length=25476 Score = 203 bits (224), Expect = 2e-46 Identities = 943/1472 (64%), Gaps = 40/1472 (3%) Strand=Plus/Plus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||||| || || | ||||| |||||||| | || || || || || || || || || Sbjct 23708 GGCAGAAACGTTCAAGATACCGTTGGCATCAATGTCGAAGGTAACCTCGATCTGGGGAAC 23767 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || | ||||||| ||||| || ||||| ||| |||| || || || || || Sbjct 23768 ACCACGGGGAGCAGGGGGGATGCCAGTCAAATCGAATTTTCCAAGCAAGTTGTTGTCCTT 23827 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 ||||| || | ||| |||||||| | |||||| || || | | ||| || || ||||| Sbjct 23828 GGTGAACTTCCTTTCTCCCTCGAAGACTTGGATGGTGACCGCTGGTTGGTTGTCGGAATA 23887 Query 517438 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 ||| || || ||| || || || || ||||| | | || | || || Sbjct 23888 AGTGGTGAAGGTGTTGGCGGCCTTGGTGGGGATGGTGGTGTTACGGTTGATGAGGTTAGT 23947 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||| || || || || | ||| | ||| | ||||| ||||| | | ||||| Sbjct 23948 CATGACACCGCCAGCAGTCTCAATACCCAAAGACAAAGGAGCAACATCCAACA--ACAAT 24005 Query 517558 ATTTT-GA-AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | | || | | | | || || |||| | | ||||| ||||| | ||| |||||| Sbjct 24006 AAGTCAGACAATCCTCCCTCGGTGACACCAGCCAAGATAGCGGCTTGGACAGCGGCACCA 24065 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || || || || || ||||| || | || | | | || ||||| || || | | Sbjct 24066 TAGGCCACGGCCTCGTCAGGGTTGATGGTCTTGCACAACTCCTTCCCATTAAAGAATTCT 24125 Query 517676 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||| | || | ||| || ||||| | || || || || || |||| || || Sbjct 24126 TGGAGAAGG-GACTGGATCTTGGGGATACGGGTGGACCCACCGACCAACACAACATCGTG 24184 Query 517735 CACCTGTGAT--TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACC 517791 | || | || |||| || ||||| | || || || || |||| |||| Sbjct 24185 GA--TGGAACCCTTGTCCATCTTGGAATCTCTCAGCACCTTCTCGACAGGGTCCAAGGTG 24242 Query 517792 CGCTCTAAACAAGTC-TGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACAT 517847 | | | |||||||| || || | || | || |||||| || | ||| || Sbjct 24243 C-CACGGAACAAGTCCTGGTTCAACTCCT-CAAAACGAGCTCTGGTCATGGAGGTG---- 24296 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || |||| || ||||||| ||||| || || || | || || | | ||||| Sbjct 24297 TAGAAGTCAACACCCTCGAACAGGGAATCGACCTCGATAGAAGCCTGGGCCTGGGAAGAG 24356 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTA---GTCT--TCGTAAGGCTTTTGCTG 517961 || | | || ||||| || || || || || | |||| | | | || |||| | Sbjct 24357 AGGGTCCTCTTGGCACGCTCGCAAGCGGTTCTCAAACGTCTCATGGCACGGGCGTTGCCG 24416 Query 517962 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGA 518020 | || || | || | || |||||||| || || | | ||| || | Sbjct 24417 GT-----CATGTCCTTCTTGTGCTTCCTCTTGAACTCAGCAG-AGAAGTGGTTGACCATG 24470 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || ||||| ||||| ||||| ||||| | ||| | || | || || | |||| ||| Sbjct 24471 CGGTTATCGAAATCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGCCTTCACTTCGAAG 24530 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||| |||| | ||| | || ||||| ||| || || |||| ||| || || Sbjct 24531 ATACCATCCTCAATGGTCAACAAAGACACATCGAAGGTGCCGCCTCCCAAATCGAAGATG 24590 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || || ||| | |||| ||| || || || | |||||| |||| ||||| ||||| Sbjct 24591 AGCACGTTCCTCTCTT-GTCCC--TTCTTGTCCAAACCATAGGCAATGGCAGCGGCAGTG 24647 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | || | | ||||||||| | || ||||| || |||||| Sbjct 24648 GGCTCGTTGATGATACGACGGACGGTCAAACCAGCAATGATACCAGCATCCTTGGTGGCT 24707 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || || || |||||||| || || ||||| ||||| || || || || | || ||| Sbjct 24708 TGCCTCTGAGAATCGTTGAAGTAGGCAGGGACAGTGATGACAGCCTCCTTGACAGGCTTA 24767 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || || | || ||| | | |||| || || ||||| || || | || || Sbjct 24768 CCGATGAAGGCCTCTGCAATCTCCCTCATCTTCACCAAGATCATGGAAGAGACTTCCTCG 24827 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA---CCA 518437 ||||| | ||| ||| | || |||| | || ||| ||| Sbjct 24828 GGGGAGAAGGTCTTCTTTTCTCCCTTGTACTCGACTTGGAGGATGGGCTTAGAGGAGCCA 24887 Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 ||| ||||| || || ||||||| ||||| || ||||| ||| ||||| ||| Sbjct 24888 CCATCGATAACCTTGAAGGGCCAGTGCTTCATGTCGGATTGCACAGCGGCCTCATTGAAA 24947 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 | | |||||| || || || ||||| || | || ||| || || || || | ||| Sbjct 24948 TGACGACCAATCAAACGCTTGGCATCGAACAGGGTGTTGTAGGGGTTCATGGCGACCTGA 25007 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | ||||| |||||||| |||| | | || || || || || | ||||| || || || Sbjct 25008 TTCTTGGCGGCATCTCCGATCAAACGCTCGGTGTCGGTGAAAGCGACATAAGAAGGGGTG 25067 Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 ||||| |||||||| || |||||||| || || || | | |||||||| || ||| Sbjct 25068 GTGCGGTTACCTTGGTCGTTCGCAATGATCTCCACACGATCGTTTTGCCAGTAGCCGACA 25127 Query 518678 CAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 || | || || || || ||||||||||| Sbjct 25128 CAGGAGTAGGTGGTACCCAAGTCAATACCAAT 25159 >seq3361 Length=2140 Score = 89.7 bits (98), Expect = 4e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||||| || | ||||||||| || || || |||| |||||||||||| || | |||||| Sbjct 1699 ACCATAAGCCATAGCAGCAGCGGTAGGCTCGTTAACAATTCTCAAAACCTTCAAACCAGC 1758 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 518292 ||| || |||| ||| || || || ||||| ||| || ||||| |||||||| Sbjct 1759 GATTTCACCAGCATTTTTTGTTGCCAATCGTTGTGCATCATTGAAATAGGCAGGAAC 1815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780359464290274