Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1840 378 9e-100 seq5144 161 1e-34 seq2582 82.4 1e-10 >seq1840 Length=25476 Score = 378 bits (418), Expect = 9e-100 Identities = 1070/1633 (66%), Gaps = 28/1633 (2%) Strand=Plus/Plus Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTTA 6583 ||||| || | | | ||||| ||||||||||| || | ||||| || || Sbjct 23544 TAGTTCTCCAAAGCGTTCTTGGCCTCGACCTTCTTGGAAGCAGCATCATCCTCGGACTTG 23603 Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643 | || || || || ||||||| | |||||||| ||| || | | ||||| || Sbjct 23604 AATTTCTCGGCGTCAGAGACCATCCTGTCAATGTCGGCTTGGGAAAGACGGCCCTTGTCG 23663 Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 || || || || |||| | | || | |||| || | ||| || ||||| Sbjct 23664 TTGGTGATGGTGATCTGGTTGATCTTGTTGGTACCCTTGTCCTTGGCAGAAACGTTCAAG 23723 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763 ||||| || ||||||| ||||| | || | || || || ||| | || || | Sbjct 23724 ATACCGTTGGCATCAATGTCGAAGGTAACCTCGATCTGGGGAACACCACGGGGAGCAGGG 23783 Query 6764 GGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCA 6823 || || || || ||||| ||| | ||||| || |||| ||| | | ||| | ||| Sbjct 23784 GGGATGCCAGTCAAATCGAATTTTCCAAGCAAGTTGTTGTCCTTGGTGAACTTCCTTTCT 23843 Query 6824 CCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT 6883 || || |||||| || || ||||| ||||| || || || | |||| | | Sbjct 23844 CCCTCGAAGACTTGGATGGTGACCGCTGGTTGGTTGTCGGAATAAGTGGTGAAGGTGTTG 23903 Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943 | ||| | || || || || || | || | ||||| | ||| || | Sbjct 23904 GCGGCCTTGGTGGGGATGGTGGTGTTACGGTTGATGAGGTTAGTCATGACACCGCCAGCA 23963 Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || | || | ||||| ||| | || ||||| | || | ||| ||| || | Sbjct 23964 GTCTCAATACCCAAAGACAAAGGAGCAACATCCAACAACAATAAGTCAG--ACA-ATCC- 24019 Query 7004 TTCCCTT-----CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCT 7058 ||||| |||| | ||||| ||||||||||| | || || || || || |||| Sbjct 24020 -TCCCTCGGTGACACCAGCCAAGATAGCGGCTTGGACAGCGGCACCATAGGCCACGGCCT 24078 Query 7059 CATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTT 7118 | || ||||| || || || || || || || ||||| | || | | | Sbjct 24079 CGTCAGGGTTGATGGTCTTGCACAACTCCTTCCCATTAAAGAATTCTTGGAGAAGGGACT 24138 Query 7119 GAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGAT---T 7175 | || || ||||| || || || ||||||||||| || | || | | | || | Sbjct 24139 GGATCTTGGGGATACGGGTGGACCCACCGACCAACACAACATCGTGGA---TGGAACCCT 24195 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 | || ||||| || |||| || || |||||||| |||| ||||||||||| Sbjct 24196 TGTCCATCTTGGAATCTCTCAGCACCTTCTCGACAGGGTCCAAGGTGCCACGGAACAAGT 24255 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 || || ||||||||||| || | ||| ||||| || ||||| ||||| || ||| Sbjct 24256 CCTGGTTCAACTCCTCAAAACGAGCTCTGGTCATGGAGGTGTAGAAGTCAACACCCTCGA 24315 Query 7296 ATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCT 7355 | | ||||| | || || | | || ||| ||||| | || | ||| || |||| Sbjct 24316 ACAGGGAATCGACCTCGATAGAAGCCTGGGCCTGGGAAGAGAGGGTCCTCTTGGCACGCT 24375 Query 7356 CACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTT 7415 | || || |||| ||||| | | |||||| | ||| |||| || || ||||| || | Sbjct 24376 CGCAAGCGGTTCTCAAACGTCTCATGGCACGGGCGTTGCCGGTCATGTCCTTCTTGTGCT 24435 Query 7416 TACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCAC 7472 | | || ||||| |||||||||| | || | | | | ||||||||| ||||||| Sbjct 24436 TCCTCTTGAACTCAGCAGAGAAGTGGTTGACCATGCGGTT---ATCGAAATCCTCACCAC 24492 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532 ||||||| || || || ||||| || || ||||| |||||||| | |||||| | |||| Sbjct 24493 CCAAGTGAGTGTCACCAGCGGTGGCCTTCACTTCGAAGATACCATCCTCAATGGTCAACA 24552 Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592 | || ||||| || || || || |||| || || ||||| |||||| | || | ||| Sbjct 24553 AAGACACATCGAAGGTGCCGCCTCCCAAATCGAAGATGAGCACGTTCCTCTC-TTGTC-- 24609 Query 7593 TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGAC 7652 ||||| || | ||| || || || || || || || || || || || |||||| | Sbjct 24610 CCTTCTTGTCCAAACCATAGGCAATGGCAGCGGCAGTGGGCTCGTTGATGATACGACGGA 24669 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 | ||| |||||||| | | ||||| || || ||||| | || |||||||| |||| Sbjct 24670 CGGTCAAACCAGCAATGATACCAGCATCCTTGGTGGCTTGCCTCTGAGAATCGTTGAAGT 24729 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 |||| ||||| || | ||| || ||| |||| |||||||| | | || || || | Sbjct 24730 AGGCAGGGACAGTGATGACAGCCTCCTTGACAGGCTTACCGATGAAGGCCTCTGCAATCT 24789 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCAC 7832 | |||| || | | ||| || || | || || | | || ||| |||| | Sbjct 24790 CCCTCATCTTCACCAAGATCATGGAAGAGACTTCCTCGGGGGAGAAGGTCTTCTTTTCTC 24849 Query 7833 CGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACC 7892 | || | || |||| | ||||| ||| | |||| ||||||||| | | || Sbjct 24850 CCTTGTACTCGACTTGGAGGATGGGCTTAGAGGAGCCACCATCGATAACCTTGAAGGGCC 24909 Query 7893 AATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTG 7952 | | ||||| ||| ||| || || || | | || || | |||||| | Sbjct 24910 AGTGCTTCATGTCGGATTGCACAGCGGCCTCATTGAAATGACGACCAATCAAACGCTTGG 24969 Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012 |||| || | ||||| | |||||||||||| || ||||| || || || ||||| | Sbjct 24970 CATCGAACAGGGTGTTGTAGGGGTTCATGGCGACCTGATTCTTGGCGGCATCTCCGATCA 25029 Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGT 8072 ||| || | || || || ||||| || || ||||| || || || |||||||||| Sbjct 25030 AACGCTC---GGTGTCGGTGAAAGCGACATAAGAAGGGGTGGTGCGGTTACCTTGGTCGT 25086 Query 8073 TCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTA 8132 ||||||| || || || || |||||||||||| |||||| || || || || || || | Sbjct 25087 TCGCAATGATCTCCACACGATCGTTTTGCCAGTAGCCGACACAGGAGTAGGTGGTACCCA 25146 Query 8133 AATCAATACCGAT 8145 | |||||||| || Sbjct 25147 AGTCAATACCAAT 25159 >seq5144 Length=14169 Score = 161 bits (178), Expect = 1e-34 Identities = 460/695 (66%), Gaps = 19/695 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||||| | || ||||||| ||| Sbjct 4124 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCTCCGGCGGTGGACAACACCTCAAAGACACC 4183 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | || | || |||||||| || ||||| |||| || | | | | Sbjct 4184 AGAGTCGATGGTCAAGATGGAGACATCAAAGGTTCCACCTCCCAAATCGTAGACCATGAT 4243 Query 7576 GTTCGTATCGTCGTCTTTGTTCTT-ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 |||| | || | ||| ||||| |||| ||||| || || || || || || || | Sbjct 4244 GTTCTTCTCTTGGTC----TTCTTGGTCGAACCCGTAGGCAATGGCGGCAGCGGTGGGCT 4299 Query 7635 CATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 | || || ||||| || || ||||| |||||||| | | ||||| || || || || Sbjct 4300 CGTTGATGATACGCAACAC-GTTCAATCCAGCAATGGCACCAGCATCCTTGGTGGCCTGG 4358 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || | |||||| |||||||| ||||| || | ||| ||| || ||| |||||| Sbjct 4359 CGCTGAGCATCGTTGAAGTAGGCAGGGACAGTGATGACAGCGGCCTGGACGGGCTTACCA 4418 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 | || || || || || || ||||| ||||| || ||||| | || ||||| || | Sbjct 4419 ATGTAAGACTCGGCAATGTCCTTCATCTTGGTGAGGACCATGGCGGAGATCTCCTCGGGA 4478 Query 7814 GCAA--ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 |||| || |||| || || || | | || | |||| || |||| Sbjct 4479 GCAAAGACCTTTTC--CTCTCCCTTGACTTGGACACGCACGTTGGGCTT-TCCG--TTCT 4533 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG-GTCCGAAAAC 7930 | || | ||| | | | | ||||||||| ||| | | || | || ||||| Sbjct 4534 TGTTGACGATCTTGAAGGGCAACAACTTCATATCGGATTGCA-CAGTGGCATCAGAAAAG 4592 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 | | ||||| | |||||| ||||| | ||||| | |||||| | || | ||| Sbjct 4593 TCGCGACCGATCAAACGCTTGATGTCAAAGAGGGTGTTCTCGGGGTTAAGGGTGGCCTGG 4652 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || | || || || | |||||| | || | || |||||||| || ||| Sbjct 4653 TTCTTGGCAGACTCACCAATCAAACGTTC---TTGGTCGTTGAAAGCGACGTAAGAGGGG 4709 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || | || || || ||||||| ||||| || || || || | || | ||| ||| Sbjct 4710 GTAATGCGGTTTCCAAGGTCGTTGGCAATGATCTCGACACGACCCTTCTTGAAGATACCG 4769 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 || || || || || ||||| ||||| ||||| || Sbjct 4770 ACACAAGAGTAGGTGGTTCCCAAATCGATACCAAT 4804 >seq2582 Length=22561 Score = 82.4 bits (90), Expect = 1e-10 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 184208 CTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCACGA 184267 || ||||| ||||| || | || || | ||| ||||| || ||||| |||||| Sbjct 9340 CTGGCGTCGCGCACATTGAGCAACTTTCCACGAAGAGGAAACACGCCGTAGAAATCACGC 9281 Query 184268 CCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATA 184327 |||||||| ||||||| | || | |||||||||||| || || ||||| | ||| Sbjct 9280 CCAACAACCCCAAGACCACTCACCGCCAATGTTTTTGCAGAGTCTCCCTCGGTTACAATC 9221 Query 184328 AGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATA 184387 || ||||| | ||| | || || ||||| |||||||| ||||| || || || Sbjct 9220 AGCGTACATTGTGAAGAACTCGCTGTTCCAGCTTTGTTGGCATCATCGAGCTTCGGTATC 9161 Query 184388 CCCGT 184392 || || Sbjct 9160 CCAGT 9156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635058735576360