Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2332 113 6e-20 >seq2332 Length=5771 Score = 113 bits (124), Expect = 6e-20 Identities = 235/350 (67%), Gaps = 9/350 (3%) Strand=Plus/Plus Query 176732 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 176791 || |||||||| || || || |||| || ||||| ||||||||| | | ||||| Sbjct 2881 AGCCCCTTGATATGCGACCCATCGTGGTCTTGATCCGCCATGATCATCAAGTGCCCATAG 2940 Query 176792 CGAAGCTCG--GAAACA-------TCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || | ||| |||| |||||||| || || | || || | || Sbjct 2941 CGGAGAGAGTTGAAGGCCTTGGTCTCTTTGTAGTCCTTGCCATGCTTCAGGCCGAGAATT 3000 Query 176843 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACA 176902 | |||||| | ||||| || ||| |||||| | | ||||||||| ||| Sbjct 3001 TGCTTGAGGTTGTTGATTTCAGTGTTCTCCAAGAGCTGCTTTGCGCTGGCATCACGCACA 3060 Query 176903 TTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGA 176962 || |||| ||||||||||| || ||||||||| ||| || ||||| || ||| Sbjct 3061 TTGAGCAACTTTCCACGAAGAGGAAACACACCGTAGAAATCACGCCCAACAACCCCAAGA 3120 Query 176963 CCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCA 177022 || || || | ||||||||| || || ||||| || || || ||||| || | || Sbjct 3121 CCACACACTGCCAACGTTTTCGCGGAGTCTCCCTCGGTGACAATCAGTGTGCATTCTGCA 3180 Query 177023 GATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGT 177072 || || || ||||| ||||| |||||||||| || ||||| ||||| Sbjct 3181 GAACTCGCTGTTCCCGCTTTGTTGGCATCATCCAGCTTTGGAATCCCAGT 3230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620670013676880