Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2332 104 3e-17 >seq2332 Length=5771 Score = 104 bits (114), Expect = 3e-17 Identities = 258/386 (67%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || || || ||||| || | |||||| | ||||||||| || | | || | || | Sbjct 1990 CCAGTGCCAATACCCTCAGCTCCATTGATGAGAACCATCGGAAGGACAGGGACATACCAC 2049 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCC----G 168406 ||||| ||||| || |||||| ||||| | ||||||||| ||| |||||| | Sbjct 2050 TCTGGCTCAATAGACATCCCATCGTCATCAAGGTAGTTGAGAATCTTATCATCCGTTTTG 2109 Query 168407 AGGATCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACC-TCGTCTGAG 168465 ||| ||| | | ||| | ||||| ||| ||||||||| || | | | || | Sbjct 2110 GGGAACAACAACC----GAGTCATTTTGGCAAGGCGTGTGAAAATATAACGTGGACTT-G 2164 Query 168466 AAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAA 168525 || |||| | ||||| ||||| || ||||||||||| | || | || ||||| | Sbjct 2165 CAGAATCCCTCCCACCTTGCAGACGGGTTCCAAATTGACCGCTTGGATGGAGGAGGTTCA 2224 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTT 168585 ||||||| || | | | |||| | ||| |||||| | | | | | | Sbjct 2225 TGTTGTTACTTCCGACAAAATTTTGAGCCATCCCAACGATCGTGGACTGGAGGCTTGCCT 2284 Query 168586 CACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGC-CAGTTGTGCCACCTTCATT 168644 |||| || || ||||||||||| || | |||||| ||||| || || || ||||| || Sbjct 2285 CACCGTGATGATACGCAGACTTCTCGGAGACATA-GCCGCTCAACTGAGCAACCTTGATA 2343 Query 168645 TCATCCTTGAGATTCTTATGGAAGCA 168670 || ||||| | || | | | ||| || Sbjct 2344 TCCTCCTTCAAATCCCTCTTGAAACA 2369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589912000863960