Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6235 105 5e-17 seq6462 104 2e-16 seq2450 100 2e-15 >seq6235 Length=3334 Score = 105 bits (116), Expect = 5e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 563297 TGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCT 563356 ||||||| | ||||| | ||| || || || || || || || || | || ||| | Sbjct 1609 TGTAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTT 1550 Query 563357 GATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 | |||||||| |||||||| || |||||||| ||||| || || || | || ||||| | Sbjct 1549 GGTCAGGAGGGATTCCTTCCTTGTCTTGAATCTTTTGCTTCACAGCTTGGATGGTATCGG 1490 Query 563417 TGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | | ||||||||||| || || || || | |||||| ||||||||||||||| Sbjct 1489 AG-GACTCGACTTCGAGAGTAATCGTCTTTCCCGTCAAAGTTTTCACGAAAATTTGCATA 1431 >seq6462 Length=11053 Score = 104 bits (114), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTT--GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGT 563349 ||||||||||||| | || |||| |||||| || |||| || ||||||| | Sbjct 7132 AATATTGTAATCA--AACAGGTCTTTCCCATCTTCGAGCTGTTGGCCACCAAAAATTAAG 7189 Query 563350 CTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATT 563409 | ||||||||| || ||||| |||||||| ||||||||||||||||| |||| || |||| Sbjct 7190 CGTTGCTGATCGGGCGGAATCCCTTCTTTGTCTTGAATTTTTTGTTTGACTGTCTGAATT 7249 Query 563410 GTATC 563414 ||||| Sbjct 7250 GTATC 7254 >seq2450 Length=27238 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | || || ||| ||| ||||| || |||||||| | || || | Sbjct 7657 AGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGG--ATGTTGTAATCGGAAAGGGTGC 7600 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || || || |||||||| || || | || ||| || ||||| || || |||| Sbjct 7599 GACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTT 7540 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGA 563433 | || ||||| ||||| ||||| || || | || || || | | || | | || || Sbjct 7539 CCTTGTCTTGGATTTTCTGTTTCACGGCTTGGATGGTGTCGGAG-GACTCGACCTCAAGG 7481 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||| || || || | |||||| ||||||||||||||| Sbjct 7480 GTAATAGTCTTTCCCGTCAAAGTTTTTACGAAAATTTGCATA 7439 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | || || || ||| ||||| || |||||||| | ||||| | Sbjct 7885 AGACGGAGGACCAAGTGGAGAGTCGATTCCTTTTGG--ATGTTGTAATCGGAAAGAGTGC 7828 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || ||||| || || ||||| || || | || ||| || |||||||| || |||| Sbjct 7827 GACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCTT 7768 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGA 563433 | || |||||||| ||||| || || || | || || |||| || | | || || Sbjct 7767 CCTTGTCTTGAATCTTTTGCTTGACGGCTTGGATGGTGTCAGAA-GACTCGACCTCAAGG 7709 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||| || || || | |||||| ||||||||||||||| Sbjct 7708 GTAATAGTCTTTCCCGTCAAAGTTTTCACGAAAATTTGCATA 7667 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | || || ||| ||| || || |||||||| | ||||| | Sbjct 7429 AGACGGAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGA 7370 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || || || || || || || || | || ||| || ||||| ||||| ||||| Sbjct 7369 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCC 7310 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || |||||||||||||| || || || | || || |||| || | | || || || Sbjct 7309 TTGTCTTGAATTTTTTGCTTGACGGCTTGGATGGTGTCAG-AAGACTCGACCTCCAGGGT 7251 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || | |||||| |||||||| ||||| Sbjct 7250 AATTGTCTTTCCCGTCAAAGTTTTTACGAAAATCTGCAT 7212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028802640406210