Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2282 134 1e-26 seq7632 132 4e-26 seq1292 132 4e-26 seq1860 131 1e-25 seq2450 127 2e-24 seq1856 123 2e-23 seq6235 111 1e-19 seq2904 111 1e-19 seq1516 87.8 1e-12 >seq2282 Length=5406 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || || || || |||||||| ||||| || |||||||||| | ||| | || Sbjct 179 CGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCA 238 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| || || || ||||| || ||||| || || || || ||||| || Sbjct 239 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTG 298 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| ||||| ||||| || || | ||||| || | || || ||||| || | Sbjct 299 TCTTGGATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATT 358 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || || || |||||||||||||| |||||||||||| Sbjct 359 GTCTTTCCCGTCAAAGTTTTTACAAAGATCTGCATGGTT 397 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| || || || ||||| || ||||| || || || || ||||| || ||||| ||| Sbjct 20 TGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATT 79 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || ||||| ||| || | ||||| || | || ||||| ||||||| ||| || || Sbjct 80 TTCTGTTTCACAGCTTGGATGGTGTCGGAAGACTCGACTTCGAGAGTGATCGTCTTTCCC 139 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||||| || |||||||| Sbjct 140 GTCAAAGTTTTTACGAAGATCTGCAT 165 >seq7632 Length=1044 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | | || || || || ||||| |||||||| || || || |||||||||| Sbjct 671 TCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGA 730 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||| | | || ||||||||||| || || || ||||| || ||||| || || || Sbjct 731 AAGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGG 790 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||||| || || ||||| ||||| || || || || | ||||||||| | || || Sbjct 791 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGACTCGAC 850 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || || || |||||||| || || |||||||| Sbjct 851 CTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 898 >seq1292 Length=4421 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | | || || || || ||||| |||||||| || || || |||||||||| Sbjct 284 TCCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGA 225 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||| | | || ||||||||||| || || || ||||| || ||||| || || || Sbjct 224 AAGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGG 165 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||||| || || ||||| ||||| || || || || | |||||||| | || || Sbjct 164 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGACTCGAC 105 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || || || ||||||||||| || |||||||| Sbjct 104 CTCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 >seq1860 Length=4765 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || ||||| || || |||||||| || || || |||||||||| | || | | | Sbjct 1971 CGCAAGACTAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTCCGGCCG 2030 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||||||||| || || || ||||| || ||||| || || || || ||||| || Sbjct 2031 TCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATCCCTTCCTTG 2090 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||| ||||| || ||| || | ||||| || | || || ||||| || | Sbjct 2091 TCTTGAATCTTTTGCTTCACAGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATA 2150 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || |||||||| || || |||||||| Sbjct 2151 GTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 2185 >seq2450 Length=27238 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || |||||||| || || || |||||||||| | ||| | | || || Sbjct 7420 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCG 7361 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||| || ||||| || || ||||| ||||| || |||||| Sbjct 7360 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGA 7301 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||||| || || || | |||||||| | || || || || || | || || Sbjct 7300 ATTTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCCAGGGTAATTGTCTTT 7241 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || ||||||||||| || |||||||||||| Sbjct 7240 CCCGTCAAAGTTTTTACGAAAATCTGCATGGTT 7208 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || || || || ||||| || || || || |||||||||| | ||| | | Sbjct 9110 CGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCG 9051 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| || || || ||||| || ||||| || || ||||| ||||| || Sbjct 9050 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTG 8991 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||||||||| || || || | ||||| || | || || ||||| || | Sbjct 8990 TCTTGAATTTTTTGCTTGACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATT 8931 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || |||||||| || || |||||||| Sbjct 8930 GTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 8896 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || |||||||| ||||| || |||||||||| | || | |||| || Sbjct 7648 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCCTCG 7589 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||| || ||||| || || || || ||||| || ||||| Sbjct 7588 AGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 7529 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||| || || | ||||| || | || || ||||| || | || || Sbjct 7528 ATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTTT 7469 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||||||||| || || ||||| Sbjct 7468 CCCGTCAAAGTTTTTACGAAAATTTGCAT 7440 >seq1856 Length=6291 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || || || || |||||||| || || || |||||||||| | || | | | Sbjct 6186 CGCAAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCG 6127 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||||||||| || || || || | || ||||| ||||| ||||| ||||| || Sbjct 6126 TCTTCCAATTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTG 6067 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| ||||| || || ||| || | || || || | || ||||| ||||||| Sbjct 6066 TCTTGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATA 6007 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || ||||| | ||||| || || || |||||||| Sbjct 6006 GTCTTACCGGTGAGGGTTTTGACGAAGATTTGCATGGT 5969 >seq6235 Length=3334 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || || || || |||||||| || || || |||||||| | | || | | Sbjct 962 CGCAAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGACCG 903 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| || || || ||||| || ||||| || || || || ||||| || Sbjct 902 TCCTCGAGCTGCTTCCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTG 843 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || ||||| || ||| || | ||||| || | || || || ||||||| Sbjct 842 TCTTGGATCTTTTGCTTCACAGCTTGGATGGTGTCGGAAGACTCGACCTCGAGAGTGATG 783 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || ||||| || | ||||| ||||| |||||||||||| Sbjct 782 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATGGTT 744 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || |||||||| || || || |||||||||| | ||| | | || || Sbjct 1412 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCA 1353 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||| || ||||| || || || || ||||| || ||||| Sbjct 1352 AGCTGCTTTCCCGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 1293 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||||| || || || | ||||| || | || || ||||| || | ||| || Sbjct 1292 ATCTTTTGCTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATCGTCTTT 1233 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||||||||| || |||||||| Sbjct 1232 CCCGTCAAAGTTTTTACGAAGATCTGCAT 1204 >seq2904 Length=2683 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 || || ||||| |||||||| || | | ||||||| |||||||| || || | | | | Sbjct 362 AATCGCAAAACCAAATGAAGAGTTGCTCCTTTTTGGATATTGTAGTCAGCAAGACTATTA 421 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| |||| |||||| ||| || |||||||||||||| || || || || |||| Sbjct 422 TCATCTTCCAGTTGCTTCCCTTTGAAGATCAAACGCTGTTGGTCAGGGGGGATTCCTTGC 481 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || ||||| |||||||| || || ||| | |||||||| ||||| |||| | || Sbjct 482 TTGTCTTGGATTTTTTGCTTCACTTCTTCGATGGTGTCAGAAACCTCCACCTCAACAATG 541 Query 101432 A 101432 | Sbjct 542 A 542 >seq1516 Length=4393 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || ||||| || ||||| || || || || ||||| || ||||| ||||| ||||| || Sbjct 2421 AAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTTCTGTTTCACG 2362 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 || | ||||| || | || || ||||| |||| || || || || ||||||||| Sbjct 2361 GCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGTCTTTCCCGTCAAAGTTTTT 2302 Query 101456 ACAAATATCTGCATGGTT 101473 || || || ||||||||| Sbjct 2301 ACGAAGATTTGCATGGTT 2284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396233344260453