Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1292 96.9 3e-15 seq7632 91.5 1e-13 seq1860 86.0 5e-12 >seq1292 Length=4421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || |||||||| || ||||| || || |||||| || || |||| Sbjct 57 ATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCTTCT 116 Query 28614 GAGACGGTGGCCGATC--TCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | || | | | ||||| |||||| ||||| ||||| | ||| || | Sbjct 117 GACACCAT--CCAAGCCGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACC 174 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||| || | ||||| || || || ||||||||||| | ||| | ||||||| | Sbjct 175 AACAACGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGTCGCACTCTTTCCGATTACA 234 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAAT 28789 |||| || || ||||||||||| ||| |||| || | | || ||| ||| |||||| Sbjct 235 ACATCCAGAAGGAATCTACTCTTCACTTGGTCTTGCGCCTTCGTGGA-GGACAATAAT 291 >seq7632 Length=1044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/238 (69%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| || ||||| || || |||||| || || |||| Sbjct 898 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCTTCT 839 Query 28614 GAGACGGTGGCCGATC--TCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | || | | | ||||| |||||| ||||| ||||| | ||| || | Sbjct 838 GACACTAT--CCAAGCCGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACC 781 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||| || | ||||| || || || ||||||||||| | ||| | ||||||| | Sbjct 780 AACAACGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGTCGCACTCTTTCCGATTACA 721 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAAT 28789 |||| || || ||||||||||| ||| |||| || | | || ||| ||| |||||| Sbjct 720 ACATCCAGAAGGAATCTACTCTTCACTTGGTCTTGCGCCTTCGTGGA-GGACAATAAT 664 >seq1860 Length=4765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || || ||||| || ||||| || ||||||||| || || | Sbjct 2644 AACATGCAAATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCC 2585 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | | | ||||| |||||| ||||| || || | ||| || Sbjct 2584 TCCGATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGAC 2525 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| || | ||||| || ||||| || | || ||| | ||| | ||||||| Sbjct 2524 CAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTAC 2465 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| ||||| ||||||||||| ||| |||| Sbjct 2464 AACATCCAAAAGGAATCTACTCTCCACTTGGT 2433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425356432670691