Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq7468 87.8 2e-12 seq5852 87.8 2e-12 seq8787 82.4 9e-11 seq4377 82.4 9e-11 seq2017 82.4 9e-11 seq1935 82.4 9e-11 seq1933 82.4 9e-11 >seq7468 Length=1077 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 86 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 27 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | ||||||||| Sbjct 26 TCCCTACAGGTGGAGTTGTT 7 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 244 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 185 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | ||||||||| Sbjct 184 TCCCTACAGGTGGAGTTGTT 165 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 407 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 348 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | |||||| || Sbjct 347 TCCCTACAGGTGGAGTTTTT 328 >seq5852 Length=2270 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 405 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 464 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | ||||||||| Sbjct 465 TCCCTACAGGTGGAGTTGTT 484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 562 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 621 Query 18186 ATCCTACCTGGGGAGTTG 18203 ||||| | ||||||| Sbjct 622 TCCCTACAGGTGGAGTTG 639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 1489 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 1548 Query 18186 ATCCTACCTGGGGAGTTG 18203 ||||| | ||||||| Sbjct 1549 TCCCTACAGGTGGAGTTG 1566 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 1325 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 1384 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | |||||| || Sbjct 1385 TCCCTACAGGTGGAGTTTTT 1404 >seq8787 Length=850 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 710 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 651 Query 18186 ATCCTACCTGGGGAGTT 18202 ||||| | |||||| Sbjct 650 TCCCTACAGGTGGAGTT 634 >seq4377 Length=1709 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 1149 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 1208 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | ||||| ||| Sbjct 1209 TCCCTACAGGTGGAGTAGTT 1228 >seq2017 Length=4930 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 728 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 787 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | |||||| || Sbjct 788 TCCCTACAGGTGGAGTTTTT 807 >seq1935 Length=31306 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 13406 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 13465 Query 18186 ATCCTACCTGGGGAGTT 18202 ||||| | |||||| Sbjct 13466 TCCCTACAGGTGGAGTT 13482 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 13489 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 13548 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | |||||| || Sbjct 13549 TCCCTACAGGTGGAGTTTTT 13568 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 13646 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 13705 Query 18186 ATCCTACCTGGGGAGTTGTT 18205 ||||| | |||||| || Sbjct 13706 TCCCTACAGGTGGAGTTTTT 13725 >seq1933 Length=3805 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 86 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 27 Query 18186 ATCCTACCTGGGGAGTT 18202 ||||| | |||||| Sbjct 26 TCCCTACAGGTGGAGTT 10 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGC-GGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| ||||||||| |||||||| |||| ||||||| |||| |||||||||||||| Sbjct 228 ATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACCGATAGGTCGTAGGTTCAA 169 Query 18186 ATCCTACCTGGGGAGTT 18202 ||||| | |||||| Sbjct 168 TCCCTACAGGTGGAGTT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561182551467600