Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1933 86.0 7e-12 seq8787 82.4 9e-11 seq1935 82.4 9e-11 >seq1933 Length=3805 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 35495 GGTAACAATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTC 35554 ||||| || ||| |||||| | ||||| |||||||||||||| |||| ||||||| | Sbjct 281 GGTAAAAAAAATA-AACTCCACCTGTAGGGATTGAACCTACGACCTATCGGTTAACAGCC 339 Query 35555 GATAGCTCTGCC-GCTGAGCTACTGAGGATT 35584 ||| |||||||| ||||||||| ||||||| Sbjct 340 GATCGCTCTGCCAGCTGAGCTAAGGAGGATT 370 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 35495 GGTAACAATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTC 35554 ||||| || ||| |||||| | ||||| |||||||||||||| |||| ||||||| | Sbjct 139 GGTAAAAAAAATA-AACTCCACCTGTAGGGATTGAACCTACGACCTATCGGTTAACAGCC 197 Query 35555 GATAGCTCTGCC-GCTGAGCTACTGAGGA 35582 ||| |||||||| ||||||||| ||||| Sbjct 198 GATCGCTCTGCCAGCTGAGCTAAGGAGGA 226 >seq8787 Length=850 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 35495 GGTAACAATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTC 35554 ||||| || ||| |||||| | ||||| |||||||||||||| |||| ||||||| | Sbjct 763 GGTAAAAAAAATA-AACTCCACCTGTAGGGATTGAACCTACGACCTATCGGTTAACAGCC 821 Query 35555 GATAGCTCTGCC-GCTGAGCTACTGAGGA 35582 ||| |||||||| ||||||||| ||||| Sbjct 822 GATCGCTCTGCCAGCTGAGCTAAGGAGGA 850 >seq1935 Length=31306 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 35501 AATCATAT-AACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAG 35559 |||||| | |||||| | ||||| |||||||||||||| |||| ||||||| |||| | Sbjct 13491 AATCATGTNAACTCCACCTGTAGGGATTGAACCTACGACCTATCGGTTAACAGCCGATCG 13432 Query 35560 CTCTGCC-GCTGAGCTACTGAGGA 35582 ||||||| ||||||||| ||||| Sbjct 13431 CTCTGCCAGCTGAGCTAAGGAGGA 13408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571987691306280