Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1856 100 5e-16 seq5736 91.5 3e-13 seq2282 87.8 3e-12 seq6235 84.2 4e-11 seq2450 84.2 4e-11 >seq1856 Length=6291 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| |||||||| || || | | ||||| || || || || ||||| || Sbjct 6126 TCTTCCAATTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTTG 6067 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| || | | | || |||||||||||||| ||||| ||||| ||| Sbjct 6066 TCTTGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAAGACTCGACTTCGAGAGTGATA 6007 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || ||||| || || |||||||| Sbjct 6006 GTCTTACCGGTGAGGGTTTTGACGAAGATTTGCAT 5972 >seq5736 Length=2708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| || | |||| ||| || || || || ||| Sbjct 2691 ATACCACCACGAAGGCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCG 2632 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | || |||||||| || || |||| ||||| ||||| Sbjct 2631 GAAAGAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGG 2572 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| || | | || |||||||| |||||| Sbjct 2571 GGGATACCTTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATGGTATCGGAGGACTCA 2512 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||| || || || || || || || || || ||||| Sbjct 2511 ACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCAT 2462 >seq2282 Length=5406 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||| || || |||| ||||| ||||| || || ||||| || ||||| ||| Sbjct 20 TGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATT 79 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || ||| | | | || || ||||||||||| ||||| ||||| || || || || Sbjct 80 TTCTGTTTCACAGCTTGGATGGTGTCGGAAGACTCGACTTCGAGAGTGATCGTCTTTCCC 139 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | |||||||| || || ||||| Sbjct 140 GTCAAAGTTTTTACGAAGATCTGCAT 165 >seq6235 Length=3334 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||| || || |||| ||||| |||||||| || ||||| || ||||| || Sbjct 893 TGCTTCCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGGATC 834 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || || | | | || || ||||||||||| || || ||||| || || || || Sbjct 833 TTTTGCTTCACAGCTTGGATGGTGTCGGAAGACTCGACCTCGAGAGTGATGGTCTTGCCA 774 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || ||||| Sbjct 773 GTCAGGGTTTTGACAAAGATCTGCAT 748 >seq2450 Length=27238 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||| || || |||| ||||| ||||| || || ||||| || ||||| || Sbjct 8813 TGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATC 8754 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || ||| | | || || ||||||||||| ||||| ||||| ||||| || || Sbjct 8753 TTCTGTTTCACGGCTTGGATGGTGTCGGAAGACTCGACTTCGAGAGTGATAGTCTTCCCG 8694 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || |||||||| Sbjct 8693 GTGAGGGTCTTGACGAAAATTTGCAT 8668 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || || || || |||| ||||| ||||| || || ||||| || ||||| || Sbjct 9269 TGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGAATC 9210 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || ||| | | || |||||||| ||||||||||| ||||| ||||| ||||| Sbjct 9209 TTCTGTTTCACGGCTTGGATGGTATCGGAGGACTCAACTTCGAGAGTGATAGTCTTACCG 9150 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| Sbjct 9149 GTGAGGGTCTTGACGAAGATCTGCAT 9124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899549489051280