Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2450 102 1e-16 seq1860 96.9 5e-15 seq2282 95.1 2e-14 seq6235 93.3 6e-14 seq5736 89.7 8e-13 >seq2450 Length=27238 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||| |||||||| | || ||||| || Sbjct 7440 ATGCAAATTTTCGTAAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 7499 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || | ||||||| | ||||| ||||| || ||||| || || || || ||| Sbjct 7500 GACACCATCCAAGCCGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 7559 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| ||||||| | ||||| ||||||||||| ||| Sbjct 7560 CAACGATTGATCTTCGCCGGAAAGCAGCTCGAGGAT 7595 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| ||||| || ||||| | || ||||| |||| Sbjct 7212 ATGCAGATTTTCGTAAAAACTTTGACGGGAAAGACAATTACCCTGGAGGTCGAGTCTTCT 7271 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || | ||| || | ||||| ||||| || ||||| || || || || ||| Sbjct 7272 GACACCATCCAAGCCGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCCCCTGACCAA 7331 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| ||||||| | || || ||||||||||| || Sbjct 7332 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 7366 >seq1860 Length=4765 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| || | ||||| ||||| ||||| || ||||| | || ||||| Sbjct 2647 AACAACATGCAAATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAG 2588 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 || |||| || | ||||| | ||||| ||||| || |||||||| || || Sbjct 2587 TCCTCCGATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCT 2528 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||| ||||||| | || || ||||||||||| ||| | ||| | || ||| Sbjct 2527 GACCAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGAT 2468 Query 155997 TATAATATATCCAAA 156011 || | | ||||||| Sbjct 2467 TACA--ACATCCAAA 2455 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| ||||| |||||||| | || ||||| || Sbjct 1729 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 1670 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | ||||| | ||||| ||||| || |||||||| || || || ||| Sbjct 1669 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 1610 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | || || ||||||||||| ||| | ||| | || ||||| | Sbjct 1609 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA-- 1552 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 1551 ACATCCAAA 1543 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 1957 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 1898 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | ||||| | ||||| ||||| || |||||||| || || || ||| Sbjct 1897 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 1838 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | || || ||||||||||| ||| | ||| | || ||||| | Sbjct 1837 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA-- 1780 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 1779 ACATCCAAA 1771 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 2413 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2354 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | ||||| | ||||| ||||| || |||||||| || || || ||| Sbjct 2353 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACCAA 2294 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | || || ||||||||||| ||| | ||| | || ||||| | Sbjct 2293 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA-- 2236 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 2235 ACATCCAAA 2227 >seq2282 Length=5406 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 393 ATGCAGATCTTTGTAAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCCTCC 334 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || | ||||||| | ||||| ||||| || ||||| || || || || ||| Sbjct 333 GACACCATCCAAGCCGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 274 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | || || ||||||||||| ||| | ||| | || ||||| | Sbjct 273 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA-- 216 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 215 ACATCCAAA 207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| ||||| || || || | |||||||| ||| Sbjct 165 ATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACGATCACTCTCGAAGTCGAGTCTTCC 106 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || | |||||| | ||||| ||||| || ||||| || || || || ||| Sbjct 105 GACACCATCCAAGCTGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 46 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| ||||||| | ||||| ||||||||||| || Sbjct 45 CAACGATTGATCTTCGCCGGCAAGCAGCTCGAGGA 11 >seq6235 Length=3334 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||| || ||||| | |||||||| || Sbjct 1432 ATGCAAATTTTCGTGAAAACTTTGACGGGAAAGACGATTACTCTCGAAGTCGAGTCCTCC 1491 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | ||||| | || || ||||| || ||||| || ||||| || ||| Sbjct 1492 GATACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGAATCCCTCCTGACCAA 1551 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| ||||||| | || || ||||||||||| ||| Sbjct 1552 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGAT 1587 >seq5736 Length=2708 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || ||||| ||||| || | |||||||| || Sbjct 2234 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGACTATCACTCTCGAAGTCGAGTCCTCC 2293 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || | |||||| | ||||| ||||| || ||||| || || || || ||| Sbjct 2294 GACACCATCCAAGCCGTGAAGCAGAAAATCCAAGACAAGGAAGGTATTCCCCCTGACCAA 2353 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||||| ||||||||||| ||| | ||| | || ||||| || Sbjct 2354 CAACGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 2413 Query 156003 AT 156004 || Sbjct 2414 AT 2415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731786654576400