Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2332 143 8e-29 >seq2332 Length=5771 Score = 143 bits (158), Expect = 8e-29 Identities = 250/359 (70%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049 ||||| |||||||||| | ||||||||| |||| |||||| | | |||| ||| | Sbjct 1990 CCAGTGCCAATACCCTCAGCTCCATTGATGAGAACCATCGGAAGGACAGGGACATACCAC 2049 Query 60050 ACTGGCTCAACACT-ATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTC 60108 ||||||||| | ||| ||||| || | | ||| | | || ||| || || ||| Sbjct 2050 TCTGGCTCAATAGACATC-CCATCGTCATCAAGGTAGTTGAGAATCTTATCATCCGTTTT 2108 Query 60109 GGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGA--TGCT 60166 ||| || | |||||| || |||| | ||||||||||||| | ||| ||| Sbjct 2109 GGGGAACAACAACCGAGTCATTTTGGCAAGGCGTGTGAAAATATAACGT--GGACTTGCA 2166 Query 60167 GCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 | ||| | ||||| ||||||||||||||||| ||| |||| |||| || || ||| Sbjct 2167 GAATCCCTCCCACCTTGCAGACGGGTTCCAAATTGACCGCTTGGATGGAGGAGGTTCATG 2226 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCA 60286 |||||| || || ||||||||||| | ||||| || | | | || || ||| Sbjct 2227 TTGTTACTTCCGACAAAATTTTGAGCCATCCCAACGATCGTGGACTGGAGGCTTGCCTCA 2286 Query 60287 CCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 ||||||||||| |||| | || || ||||| || || || || || || || || || Sbjct 2287 CCGTGATGATACGCAGACTTCTCGGAGACATAGCCGCTCAACTGAGCAACCTTGATATC 2345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471641676861873