Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1860 93.3 3e-14 seq2282 84.2 2e-11 seq2450 82.4 6e-11 >seq1860 Length=4765 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || || |||||||| || || || ||||||||| | || ||| | Sbjct 2644 AACATGCAAATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCC 2585 Query 110330 GACGATACTGTCGGCCAG--GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 |||||| || | || || || ||||| || ||||| |||||| | ||| | Sbjct 2584 TCCGATACCATC--CAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTG 2527 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 | |||||| || | || | || || || ||||| ||||||| | || | | |||| Sbjct 2526 ACCAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATT 2467 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||| ||||| |||||||| | ||| |||| Sbjct 2466 ACAACATCCAAAAGGAATCTACTCTCCACTTGGT 2433 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||| || || || ||||||||| | || ||| | | Sbjct 1957 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 1898 Query 110333 GATACTGTCGGCCAG--GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| || | || || || ||||| || ||||| |||||| | ||| || | Sbjct 1897 GATACCATC--CAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACC 1840 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| || | || | || || || ||||| ||||||| | || | | ||||||| Sbjct 1839 AACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA 1780 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| ||||| |||||||| | ||| |||| Sbjct 1779 ACATCCAAAAGGAATCTACTCTCCACTTGGT 1749 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||| || || || ||||||||| | || ||| | | Sbjct 2413 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2354 Query 110333 GATACTGTCGGCCAG--GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| || | || || || ||||| || ||||| |||||| | ||| || | Sbjct 2353 GATACCATC--CAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACC 2296 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| || | || | || || || ||||| ||||||| | || | | ||||||| Sbjct 2295 AACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA 2236 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| ||||| |||||||| | ||| |||| Sbjct 2235 ACATCCAAAAGGAATCTACTCTCCACTTGGT 2205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||| || || || || |||||| | || ||| | | Sbjct 1729 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 1670 Query 110333 GATACTGTCGGCCAG--GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| || | || || || ||||| || ||||| |||||| | ||| || | Sbjct 1669 GATACCATC--CAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGACC 1612 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| || | || | || || || ||||| ||||||| | || | | ||||||| Sbjct 1611 AACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA 1552 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||| ||||| |||||||| | ||| |||| || Sbjct 1551 ACATCCAAAAGGAATCTACTCTCCACTTGGTCTT 1518 >seq2282 Length=5406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||||| || || || || |||||| | || ||| | | Sbjct 393 ATGCAGATCTTTGTAAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCCTCC 334 Query 110333 GATACTGTCG--GCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || || ||| || |||||||| || ||||| ||||| | ||| || | Sbjct 333 GACACCATCCAAGCC--GTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACC 276 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| || | || | || || || ||||| ||||||| | || | | ||||||| Sbjct 275 AACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACA 216 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||| ||||| |||||||| | ||| |||| || Sbjct 215 ACATCCAAAAGGAATCTACTCTCCACTTGGTCTT 182 >seq2450 Length=27238 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||||| || || || || |||||| | || ||| | | Sbjct 7440 ATGCAAATTTTCGTAAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 7499 Query 110333 GATACTGTCG--GCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || || ||| || |||||||| || ||||| ||||| | ||| || | Sbjct 7500 GACACCATCCAAGCC--GTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACC 7557 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| || | || | || || || ||||| ||||||| | || | | ||||||| Sbjct 7558 AACAACGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTTCCGATTACA 7617 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| ||||| |||||||| | ||| |||| Sbjct 7618 ACATCCAAAAGGAATCTACTCTCCACTTGGT 7648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412794661071197