Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1391 100 5e-15 >seq1391 Length=7859 Score = 100 bits (110), Expect = 5e-15 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||| ||||| || || |||||| |||||| || || | | Sbjct 2942 GTACTTGGTGACAGCCTTGGTTCCCTCAGACACAGCGTGCTTGGCCAACTCTCCAGGAAG 2883 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 | || || || || || ||||||||||| | | ||| || |||||| || Sbjct 2882 AAGAAGACGGACAGCAGTTTGGATCTCGCGAGAGGTGATGGTAGACTTCTTGTTGTATCG 2823 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 || || || || | ||||| | | ||| |||| || || | ||| || || | ||| Sbjct 2822 AGCAAGACGACCAGACTCGGCAGCAACGCGCTCGAAGATATCTTGGACGAAGGAATCCAT 2763 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||| || |||||||| || |||||||| || ||||| | ||| ||| Sbjct 2762 GATTTGCATGCCCTTCTTGGAGATACCAGTCTCGGGGTGGACTTGCTTCAACACACGGTA 2703 Query 1485711 AACAAAGGACGAGTACGAGGCATAGTTTTTCTT 1485743 | ||| ||||| || |||||||| |||| Sbjct 2702 GATGTAGGTGGAGTAAGAAGCATAGTTGCTCTT 2670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915254031720431