Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1840 187 2e-41 seq3361 89.7 4e-12 >seq1840 Length=25476 Score = 187 bits (206), Expect = 2e-41 Identities = 941/1474 (64%), Gaps = 44/1474 (3%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||||| || || | ||||| |||||||| | || || || || || || || || || Sbjct 23708 GGCAGAAACGTTCAAGATACCGTTGGCATCAATGTCGAAGGTAACCTCGATCTGGGGAAC 23767 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | ||||||| ||||| || ||||| ||| |||| || || || || || Sbjct 23768 ACCACGGGGAGCAGGGGGGATGCCAGTCAAATCGAATTTTCCAAGCAAGTTGTTGTCCTT 23827 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 ||||| || | ||| |||||||| | |||||| || || | | ||| || || ||||| Sbjct 23828 GGTGAACTTCCTTTCTCCCTCGAAGACTTGGATGGTGACCGCTGGTTGGTTGTCGGAATA 23887 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||| || || ||| || || || || ||||| | | || | || || Sbjct 23888 AGTGGTGAAGGTGTTGGCGGCCTTGGTGGGGATGGTGGTGTTACGGTTGATGAGGTTAGT 23947 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | ||| ||||| || || | ||| | ||| | ||||| ||||| | | ||||| Sbjct 23948 CATGACACCGCCAGCAGTCTCAATACCCAAAGACAAAGGAGCAACATCCAACA--ACAAT 24005 Query 281725 ATTTT-GA-AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | | || | | | | || || |||| | | ||||| ||||| | ||| |||||| Sbjct 24006 AAGTCAGACAATCCTCCCTCGGTGACACCAGCCAAGATAGCGGCTTGGACAGCGGCACCA 24065 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || || || || || ||||| || | || | | | || ||||| || || | | Sbjct 24066 TAGGCCACGGCCTCGTCAGGGTTGATGGTCTTGCACAACTCCTTCCCATTAAAGAATTCT 24125 Query 281843 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||| | || | ||| || ||||| | || || || || || |||| || || Sbjct 24126 TGGAGAAGG-GACTGGATCTTGGGGATACGGGTGGACCCACCGACCAACACAACATCGTG 24184 Query 281902 CACCTGTGAT--TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGA-- 281956 | || | || |||| || ||||| | || || || || |||| |||| Sbjct 24185 GA--TGGAACCCTTGTCCATCTTGGAATCTCTCAGCACCTTCTCGACAGGGTCCAAGGTG 24242 Query 281957 CCAGCTCTAAACAAGTC-TGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGAC 282012 ||| | |||||||| || || | || | || |||||| || | ||| || Sbjct 24243 CCA---CGGAACAAGTCCTGGTTCAACTCCT-CAAAACGAGCTCTGGTCATGGAGGTG-- 24296 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 || || |||| || ||||||| ||||| || || || | || || | | |||| Sbjct 24297 --TAGAAGTCAACACCCTCGAACAGGGAATCGACCTCGATAGAAGCCTGGGCCTGGGAAG 24354 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTA---GTCT--TCGTAAGGCTTTTGC 282126 | || | | || ||||| || || || || || | |||| | | | || |||| Sbjct 24355 AGAGGGTCCTCTTGGCACGCTCGCAAGCGGTTCTCAAACGTCTCATGGCACGGGCGTTGC 24414 Query 282127 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAA 282185 | | || || | || | || |||||||| || || | | ||| || | Sbjct 24415 CGGT-----CATGTCCTTCTTGTGCTTCCTCTTGAACTCAGCAG-AGAAGTGGTTGACCA 24468 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 || ||||| ||||| ||||| ||||| | ||| | || | || || | |||| || Sbjct 24469 TGCGGTTATCGAAATCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGCCTTCACTTCGA 24528 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | ||||| |||| | ||| | || ||||| ||| || || |||| ||| || | Sbjct 24529 AGATACCATCCTCAATGGTCAACAAAGACACATCGAAGGTGCCGCCTCCCAAATCGAAGA 24588 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 | || || ||| | |||| ||| || || || | |||||| |||| ||||| |||| Sbjct 24589 TGAGCACGTTCCTCTCTT-GTCCC--TTCTTGTCCAAACCATAGGCAATGGCAGCGGCAG 24645 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 | || || || || || | || | | ||||||||| | || ||||| || |||| Sbjct 24646 TGGGCTCGTTGATGATACGACGGACGGTCAAACCAGCAATGATACCAGCATCCTTGGTGG 24705 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTT 282485 |||| || || |||||||| || || ||||| ||||| || || || || | || | Sbjct 24706 CTTGCCTCTGAGAATCGTTGAAGTAGGCAGGGACAGTGATGACAGCCTCCTTGACAGGCT 24765 Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 | || || | || ||| | | |||| || || ||||| || || | || | Sbjct 24766 TACCGATGAAGGCCTCTGCAATCTCCCTCATCTTCACCAAGATCATGGAAGAGACTTCCT 24825 Query 282546 CTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA---C 282602 | || || | ||| ||| | || |||| | || ||| | Sbjct 24826 CGGGGGAGAAGGTCTTCTTTTCTCCCTTGTACTCGACTTGGAGGATGGGCTTAGAGGAGC 24885 Query 282603 CAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662 || ||| ||||| || || ||||| | ||||| || ||||| ||| ||||| | Sbjct 24886 CACCATCGATAACCTTGAAGGGCCAGTGCTTCATGTCGGATTGCACAGCGGCCTCATTGA 24945 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTT 282722 ||| | |||||| || || || ||||| || | || ||| || || | || | | Sbjct 24946 AATGACGACCAATCAAACGCTTGGCATCGAACAGGGTGTTGTAGGGGTTCATGGCGACCT 25005 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 282782 ||| ||||| |||||||| |||| | | || || || || || | ||||| || || | Sbjct 25006 GATTCTTGGCGGCATCTCCGATCAAACGCTCGGTGTCGGTGAAAGCGACATAAGAAGGGG 25065 Query 282783 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 282842 | ||||| |||||||| || |||||||| || || || | | |||||||| || | Sbjct 25066 TGGTGCGGTTACCTTGGTCGTTCGCAATGATCTCCACACGATCGTTTTGCCAGTAGCCGA 25125 Query 282843 CACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 |||| | || || || || ||||||||||| Sbjct 25126 CACAGGAGTAGGTGGTACCCAAGTCAATACCAAT 25159 >seq3361 Length=2140 Score = 89.7 bits (98), Expect = 4e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 |||||| || | ||||||||| || || || |||| |||||||||||| || | |||||| Sbjct 1699 ACCATAAGCCATAGCAGCAGCGGTAGGCTCGTTAACAATTCTCAAAACCTTCAAACCAGC 1758 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459 ||| || |||| ||| || || || ||||| ||| || ||||| |||||||| Sbjct 1759 GATTTCACCAGCATTTTTTGTTGCCAATCGTTGTGCATCATTGAAATAGGCAGGAAC 1815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740172385524354