Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6235 86.0 6e-12 seq2282 86.0 6e-12 seq6462 84.2 2e-11 seq1860 82.4 7e-11 >seq6235 Length=3334 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | ||||| || | ||||| ||||||||||| || | Sbjct 976 ATGCAGATCTTTGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTCGAATCCTCC 1035 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||| | || || ||||| ||| || || || ||||| || || || || Sbjct 1036 GACACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGTATCCCCCCTGACCAA 1095 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || |||||| || ||||| |||| | | | ||||||||| Sbjct 1096 CAACGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGCACCCTTTCCGATTACAAC 1155 Query 25355 ATTCAAAAAGAATCCAC 25371 || ||||| ||||| || Sbjct 1156 ATCCAAAAGGAATCTAC 1172 >seq2282 Length=5406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 25169 AACAAC-ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 |||||| ||||| | ||||||||||| || || ||||| | || || | || ||||| Sbjct 400 AACAACCATGCAGATCTTTGTAAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGA 341 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 || ||| || ||| | || ||||| ||||| || || || ||||| || || Sbjct 340 GTCCTCCGACACCATCCAAGCCGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCC 281 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 || || ||| || | || | || ||||| || ||||| |||| | | | | | ||| Sbjct 280 TGACCAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGA 221 Query 25348 TTACAATATTCAAAAAGAATCCAC 25371 |||||| || ||||| ||||| || Sbjct 220 TTACAACATCCAAAAGGAATCTAC 197 >seq6462 Length=11053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||| |||||||||||| || ||||| || || |||||||||||| Sbjct 7254 GATACAATTCAGACAGTCAAACAAAAAATTCAAGACAAAGAAGGGATTCCGCCCGATCAG 7195 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG--ATAGAAATGTCAGCGATTACA 25352 ||| | | |||| || ||| |||| |||||||||| | ||| ||| | |||||| Sbjct 7194 CAACGCTTAATTTTTGGTGGCCAACAGCTCGAAGATGGGAAAGACCTGTTTG--ATTACA 7137 Query 25353 ATATTCA 25359 ||||||| Sbjct 7136 ATATTCA 7130 >seq1860 Length=4765 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||||||||||| | || || ||||| || || ||||| | || || | || ||||| Sbjct 2647 AACAACATGCAAATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAG 2588 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || |||||| ||| | || || || ||||| || || || || || || || Sbjct 2587 TCCTCCGATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCT 2528 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 || || ||| || | || | || ||||| || ||||| |||| | | | | | |||| Sbjct 2527 GACCAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGAT 2468 Query 25349 TACAATATTCAAAAAGAATCCAC 25371 ||||| || ||||| ||||| || Sbjct 2467 TACAACATCCAAAAGGAATCTAC 2445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445042496429280