Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq7817 178 2e-39 >seq7817 Length=11892 Score = 178 bits (196), Expect = 2e-39 Identities = 396/589 (67%), Gaps = 4/589 (1%) Strand=Plus/Minus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 || |||||||| |||||||| ||||| || ||| || ||||||||||| || || Sbjct 4457 TTGAGGGGCTCGACGTGGTTCTTATAGACATGGTAGTCACCGAGGGTGTGCACGAATTCT 4398 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 || | ||| || || || || || | | || | || || || || ||| Sbjct 4397 CCAGCCTTGAGACCACAAACTTGAGCAATGAGCCGAGTCAACAAAGAATACGAAGCAATG 4338 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC 147096 |||||||||||||| |||||||| || | |||| ||||||| | |||||| | || Sbjct 4337 TTGAAGGGGACCCCAAGGCCCATATCACAGGACCGTTGGTACATCAAGCACGACAATTCT 4278 Query 147097 CCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGG 147156 || | | || | |||||||| | ||||| || || || || ||||| | || | Sbjct 4277 CCATTCGAAACAAAGAACTGGCAAAACATGTGACATGGGGGAAGTGCCATTTCTGGGATC 4218 Query 147157 TCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCT-CGGGGTTCCTCTTAATCTC 147215 ||| |||||||| || || | | | || | | ||| ||||| |||| |||| Sbjct 4217 GCCGACGGGTTCCACGCAGACATGATGATACGTC-GATCTGTCGGGTTGTTCTTGATCTT 4159 Query 147216 TTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCA 147274 |||||| || | ||||||||||||||| || || |||| | | | ||| || Sbjct 4158 TTCGATTACTTGCGCCAGCTGGTCCACGCCTTGTCCAGTGTAG-TCGGCATGCATATCAG 4100 Query 147275 CGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCT 147334 |||| | ||||||||||| | |||||| || || || | || |||||||| || || Sbjct 4099 TGTACTTTGCCCCAAAGTGGCGCCACTGAAATCCATAGATCGGGCCCAGGTCCCCAACCT 4040 Query 147335 TTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGC 147394 | || || || | | | ||| |||||| | ||||| | ||| ||||| || | Sbjct 4039 CACGATGATTCAAACCGGACTTATCGAGGAACTCGCGCGACCCATTGGCATCCCAAATTC 3980 Query 147395 CCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 || ||||| | | ||| || || |||| || ||| ||||||||||| | Sbjct 3979 GAACCCCCTTTTCCGTCAGCGTGTTGCCGTTGGTGGCCCCAGCGATAAACCAGAGCAGTT 3920 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA 147503 |||| || ||| ||||||||||| | ||| ||||| || |||||||| Sbjct 3919 CCTCAGCAAGCCCTCTCCAAAAGACACGCTTCGTGGTGAGGAGGGGGAA 3871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583419958005600