Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1860 87.8 1e-12 >seq1860 Length=4765 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || |||||||| || || ||||| ||||| || |||||||||||| | || || || Sbjct 2644 AACATGCAAATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCC 2585 Query 106317 GGCGATTCTGTTGGCCAAG---TGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTT 106373 |||| | | ||||| |||| || ||||| ||||| |||||| | ||| | Sbjct 2584 TCCGATACCAT---CCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCT 2528 Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 || |||||| | | || | || ||||| || | || ||| | ||| | |||| Sbjct 2527 GACCAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGAT 2468 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGT 106468 |||||||| ||||| |||||||| || || || || Sbjct 2467 TACAACATCCAAAAGGAATCTACTCTCCACTTGGT 2433 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || ||||| ||||| || |||||||||||| | || || || | Sbjct 1957 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 1898 Query 106320 GATTCTGTTGGCCAAG---TGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | | ||||| |||| || ||||| ||||| |||||| | ||| ||| Sbjct 1897 GATACCAT---CCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGAC 1841 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | || | || ||||| || | || ||| | ||| | ||||||| Sbjct 1840 CAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTAC 1781 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGT 106468 ||||| ||||| |||||||| || || || || Sbjct 1780 AACATCCAAAAGGAATCTACTCTCCACTTGGT 1749 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || ||||| ||||| || |||||||||||| | || || || | Sbjct 2413 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACCATTACCCTTGAGGTCGAGTCCTCC 2354 Query 106320 GATTCTGTTGGCCAAG---TGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | | ||||| |||| || ||||| ||||| |||||| | ||| ||| Sbjct 2353 GATACCAT---CCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCCCCTGAC 2297 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | || | || ||||| || | || ||| | ||| | ||||||| Sbjct 2296 CAACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTAC 2237 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGT 106468 ||||| ||||| |||||||| || || || || Sbjct 2236 AACATCCAAAAGGAATCTACTCTCCACTTGGT 2205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402283856256032