Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2450 150 2e-31 seq1860 150 2e-31 seq2282 149 6e-31 seq6235 136 4e-27 seq147 129 6e-25 seq6462 100 3e-16 >seq2450 Length=27238 Score = 150 bits (166), Expect = 2e-31 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| || |||||||| ||| || ||| || ||| |||||||| Sbjct 7415 GTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTG 7356 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||| || || || || || || || ||||| || ||||||||||| Sbjct 7355 CTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTTGTCTTGAATTTT 7296 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||||| || | | ||||| || || || || || || ||||| || || || || Sbjct 7295 TTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACCTCCAGGGTAATTGTCTTTCCCGT 7236 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTTC 134726 |||||||| |||||||| |||| | ||| |||||| Sbjct 7235 CAAAGTTTTTACGAAAATCTGCA--TGGTTGTTGTTC 7201 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || ||||| || |||||||| ||| || ||| || Sbjct 9113 AGGCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGA 9054 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || ||||| || || || || || || || ||||| Sbjct 9053 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCC 8994 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||||||||| ||||| || | | |||||||| || || || || || ||| Sbjct 8993 TTGTCTTGAATTTTTTGCTTGACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTA 8934 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || |||||||| ||||| || ||||| Sbjct 8933 ATTGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 8896 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || || ||||||||||| |||||||| ||| | Sbjct 7894 CCTCCACGAAGACGGAGGACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGAA 7835 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| ||||| || || ||||| || || || || || || Sbjct 7834 AGAGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGG 7775 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| ||||| ||||| || | | ||||| || || || || Sbjct 7774 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACC 7715 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || || |||||||| |||||||||||||| Sbjct 7714 TCAAGGGTAATAGTCTTTCCCGTCAAAGTTTTCACGAAAATTTGCAT 7668 Score = 149 bits (164), Expect = 6e-31 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || ||||| || |||||||| ||| || ||| || Sbjct 8885 AGGCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGA 8826 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || ||||| || || || || || || || ||||| Sbjct 8825 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCC 8766 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| || || | | |||||||| || || || |||||||| Sbjct 8765 TTGTCTTGAATCTTCTGTTTCACGGCTTGGATGGTGTCGGAAGACTCGACTTCGAGAGTG 8706 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTTC 134726 || || || ||||| | || || ||||||||||||| | ||| |||||| Sbjct 8705 ATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTGCA--TGGTTGTTGTTC 8657 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||||||||| |||||||| ||| || |||| || || |||||||| Sbjct 7643 GTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGACCATCCTCGAGCTG 7584 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || ||||| || || || || || || || ||||| || ||||| ||||| Sbjct 7583 CTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATTTT 7524 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || || | | |||||||| || || || || || ||||| || || || || Sbjct 7523 CTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTAATAGTCTTTCCCGT 7464 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| |||||||||||||| Sbjct 7463 CAAAGTTTTTACGAAAATTTGCAT 7440 >seq1860 Length=4765 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||||||||| |||||||| ||| || ||| || || |||||||| Sbjct 2438 GTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTG 2497 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||| || || || || || || |||||||| || ||||| ||||| Sbjct 2498 CTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTT 2557 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || || | | || ||||| || || || || || |||||||| || || || Sbjct 2558 CTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGT 2617 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 |||||||| ||||| |||||||| ||||| |||| Sbjct 2618 CAAAGTTTTCACGAAGATTTGCATGTTGTTGGTGTT 2653 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || ||||||||||| |||||||| ||| || ||| || Sbjct 1512 AGGCGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGA 1571 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || ||||| || || || || || || |||||||| Sbjct 1572 CCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCC 1631 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| || || || || | | || ||||| || || || || || ||| Sbjct 1632 TTGTCTTGGATTTTCTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTA 1691 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || |||||||| ||||| || ||||| Sbjct 1692 ATAGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 1729 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||||||||| |||||||| ||| || ||| || || |||||||| Sbjct 1754 GTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTG 1813 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||| || || || || || || |||||||| || ||||| ||||| Sbjct 1814 CTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTT 1873 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || || | | || ||||| || || || || || |||||||| || || || Sbjct 1874 CTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGT 1933 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| Sbjct 1934 CAAAGTTTTCACGAAGATCTGCAT 1957 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||||||||| |||||||| ||| || ||| || || |||||||| Sbjct 2210 GTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCGAGCTG 2269 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || ||||| || || || || || || |||||||| || ||||| ||||| Sbjct 2270 CTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTT 2329 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || || | | || ||||| || || || || || |||||||| || || || Sbjct 2330 CTGCTTCACAGCTTGGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTTCCCGT 2389 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| Sbjct 2390 CAAAGTTTTCACGAAGATCTGCAT 2413 >seq2282 Length=5406 Score = 149 bits (164), Expect = 6e-31 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || ||||||||||| |||||||| ||| || ||| || Sbjct 176 AGGCGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGA 235 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || ||||| || || || || || || || ||||| Sbjct 236 CCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCC 295 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| ||||| || || | | |||||||| || || || || || ||| Sbjct 296 TTGTCTTGGATTTTCTGTTTCACGGCTTGGATGGTGTCGGAGGACTCGACCTCAAGGGTA 355 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTTTTGTTC 134726 || || || || || |||||||| || || || ||||| ||||| |||||| Sbjct 356 ATTGTCTTTCCCGTCAAAGTTTTTACAAAGATCTGCATGGTTGTTGTTGTTC 407 >seq6235 Length=3334 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || ||||||||||| |||||||| ||| || |||| | Sbjct 1193 AGGCGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGGGTGCGC 1134 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || || | || || || || || || || ||||| Sbjct 1133 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGGATACCTTCC 1074 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| ||||| || || || | | |||||||| ||||| || |||||||| Sbjct 1073 TTGTCTTGAATCTTTTGCTTCACAGCTTGGATGGTGTCGGAGGATTCGACTTCGAGAGTG 1014 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || || || || ||||| Sbjct 1013 ATAGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCAT 976 Score = 123 bits (136), Expect = 3e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 134536 TGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCT 134595 |||| ||| || ||| || || |||||||| ||||| || || ||||| || || | Sbjct 1609 TGTAATCGGAAAGAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTT 1550 Query 134596 GATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGG 134655 | || || || || ||||| || |||||||| ||||| || || || | | || |||| Sbjct 1549 GGTCAGGAGGGATTCCTTCCTTGTCTTGAATCTTTTGCTTCACAGCTTGGATGGTATCGG 1490 Query 134656 ACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||||||||| || || || || |||||||| |||||||||||||| Sbjct 1489 AGGACTCGACTTCGAGAGTAATCGTCTTTCCCGTCAAAGTTTTCACGAAAATTTGCAT 1432 >seq147 Length=786 Score = 129 bits (142), Expect = 6e-25 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 134532 ATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGC 134591 |||||||| ||| || ||| || ||| |||||||| ||||| || || ||||| || Sbjct 3 ATGTTGTAATCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGT 62 Query 134592 TGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTG 134651 || || || || || || ||||| || |||||||| || ||||| || || | | ||| Sbjct 63 TGTTGGTCAGGGGGAATACCTTCCTTGTCTTGAATCTTCTGTTTCACGGCTTGGATGGTG 122 Query 134652 TCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711 ||||| || || || |||||||| || || || ||||| | || || |||||||||||| Sbjct 123 TCGGAAGACTCGACTTCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTGACGAAAATTTGC 182 Query 134712 ATTTTGTTTTTGTTC 134726 | | ||| |||||| Sbjct 183 A--TGGTTGTTGTTC 195 >seq6462 Length=11053 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || |||||||||| ||| ||||||| || || |||||||||||||| || |||||||| Sbjct 7160 TCTTCGAGCTGTTGGCCACCAAAAATTAAGCGTTGCTGATCGGGCGGAATCCCTTCTTTG 7219 Query 134619 TCTTGAATTTTTTGTTTGAC 134638 |||||||||||||||||||| Sbjct 7220 TCTTGAATTTTTTGTTTGAC 7239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505339464229080