Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq6446 149 9e-31 >seq6446 Length=1463 Score = 149 bits (164), Expect = 9e-31 Identities = 244/349 (70%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 161369 GAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGG 161428 |||| ||| || |||||||| || ||||| || | || ||| ||| | |||||| Sbjct 1030 GAAAAAACTCCCTTCTACCCCCGCTCTCCCTACGCATGTGCCAAAGTCTTTTCCTATTGG 971 Query 161429 ATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAAC 161488 ||||| |||||| |||| ||||| ||||| | | ||||||| ||||||| Sbjct 970 ATTGTCGTAAACTACCGAGAAGCCTATGGAATGCATGGTTCCAATGGTATTTTATTCAAT 911 Query 161489 CATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCC 161548 || ||| ||| | ||||| |||||||| || | || | || ||||| | Sbjct 910 CACGAGAGCCCAAGGAGGGGTCCTACTTTCGTGACGAGGAAAGTGACCAGGGGGGTGGTG 851 Query 161549 CGTATTAGTACAGG-ACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGA 161607 | || | || ||| ||||| ||| | ||| | || ||| | | || ||| |||| Sbjct 850 AGGATCGCAGCGGGGACT-CAGGAGTGTTTGTACATGGGAAATTTGGATTCGAGAAGAGA 792 Query 161608 TTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCC 161667 |||||| |||||| | || ||||| ||||| |||||||||||| | |||||||| | || Sbjct 791 TTGGGGGCATGCTAAGGAGTATGTCGAGGCGATGTGGTTGATGCTGCAACAGGATAAGCC 732 Query 161668 TGATGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTGAAGGACTTT 161716 ||||||| |||||||| ||||| | ||||| || |||| |||||| Sbjct 731 CGATGACTTTGTGATTGGGACAGGGATTGAGTACTCCGTGAGAGACTTT 683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729844481084520