Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7817 89.7 4e-13 >seq7817 Length=11892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 300/463 (65%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 || || || || || | ||||||||||||| ||| || ||||| ||||| || |||| Sbjct 4045 GGGGACCTGGGCCCGATCTATGGATTTCAGTGGCGCCACTTTGGGGCAAAGTA---CACT 4101 Query 40926 ---ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 ||| | | || || || |||| |||| || | | || || || | | Sbjct 4102 GATATGCATGCCGACTACACTGGACAAGGCGTGGACCAGCTGGCGCAAGTAATCGAAAAG 4161 Query 40983 ATTAAATCCGATCCCGATAGC-CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 || || | | ||||| || |||||||| || ||| ||||||||||| ||| | Sbjct 4162 ATCAAGAACAA-CCCGACAGATCGACGTATCATCATGTCTGCGTGGAACCCGTCGGCGAT 4220 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGA 41101 | |||||| | || || ||||| |||| || ||||| | |||| ||||| || Sbjct 4221 CCCAGAAATGGCACTTCCCCCATGTCACATGTTTTGCCAGTTCTTTGTTTCGAATGGAGA 4280 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 | |||| || |||| ||| | || |||| ||||| || |||||||| || ||||| Sbjct 4281 ATTGTCGTGCTTGATGTACCAACGGTCCTGTGATATGGGCCTTGGGGTCCCCTTCAACAT 4340 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGA 41221 || ||| || || | || | ||||| || ||| | | || |||| || Sbjct 4341 TGCTTCGTATTCTTTGTTGACTCGGCTCATTGCTCAAGTTTGTGGTCTCAAGGCTGGAGA 4400 Query 41222 ATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGA 41281 ||| || ||||| | || || ||| | || | || ||| | ||||| | | || Sbjct 4401 ATTCGTGCACACCCTCGGTGACTACCATGTCTATAAGAACCACGTCGAGCCCCTCAAGGA 4460 Query 41282 ACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATT 41324 || ||| || | || || |||||||| | ||| |||||| Sbjct 4461 GCAGTTGAAGAGAGAGCCGAGGCCATTTCCCAAGCTTCTTATT 4503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397410810370645