Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2332 104 3e-17 >seq2332 Length=5771 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 179935 GCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 179994 ||||| || ||||| |||| ||||| ||||| |||||||||||| |||||| ||| Sbjct 3049 GCATCACGCACATTGAGCAACTTTCCACGAAGAGGAAACACACCGTAGAAATCACGCCCA 3108 Query 179995 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGC 180054 || || |||||| ||||| | || |||||||| || ||||| || || || || Sbjct 3109 ACAACCCCAAGACCACACACTGCCAACGTTTTCGCGGAGTCTCCCTCGGTGACAATCAGT 3168 Query 180055 GTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACCA 180114 || || | | |||| || || || || ||||| || || |||| ||| ||||| ||| Sbjct 3169 GTGCATTCTGCAGAACTCGCTGTTCCCGCTTTGTTGGCATCATCCAGCTTTGGAATCCCA 3228 Query 180115 GT 180116 || Sbjct 3229 GT 3230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618363082725240