Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2332 125 8e-24 seq2582 96.9 4e-15 >seq2332 Length=5771 Score = 125 bits (138), Expect = 8e-24 Identities = 238/350 (68%), Gaps = 9/350 (3%) Strand=Plus/Plus Query 169169 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 169228 || |||||||| || || || |||| || ||||| ||||||||| | | ||||| Sbjct 2881 AGCCCCTTGATATGCGACCCATCGTGGTCTTGATCCGCCATGATCATCAAGTGCCCATAG 2940 Query 169229 CGAAGCTCG--GAAACA-------TCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || | ||| |||| |||||||| || || | || || | || Sbjct 2941 CGGAGAGAGTTGAAGGCCTTGGTCTCTTTGTAGTCCTTGCCATGCTTCAGGCCGAGAATT 3000 Query 169280 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACA 169339 | |||||| | ||||| || ||| |||||| | | |||||| || ||| Sbjct 3001 TGCTTGAGGTTGTTGATTTCAGTGTTCTCCAAGAGCTGCTTTGCGCTGGCATCACGCACA 3060 Query 169340 TTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGA 169399 || |||| ||||||||||| || ||||||||| |||||| ||||| || ||| Sbjct 3061 TTGAGCAACTTTCCACGAAGAGGAAACACACCGTAGAAATCACGCCCAACAACCCCAAGA 3120 Query 169400 CCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCA 169459 || ||||| | || ||||| ||||| ||||||||||| || || || |||| | || Sbjct 3121 CCACACACTGCCAACGTTTTCGCGGAGTCTCCCTCGGTGACAATCAGTGTGCATTCTGCA 3180 Query 169460 GATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGT 169509 || || || ||||| ||||| |||||||||| || ||||| ||||| Sbjct 3181 GAACTCGCTGTTCCCGCTTTGTTGGCATCATCCAGCTTTGGAATCCCAGT 3230 >seq2582 Length=22561 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 169327 GGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACC 169386 ||| ||||| ||||| |||| ||||||||||| || || |||||| |||||| || Sbjct 9338 GGCGTCGCGCACATTGAGCAACTTTCCACGAAGAGGAAACACGCCGTAGAAATCACGCCC 9279 Query 169387 AACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAG 169446 ||| || ||||| || || | || || || ||||| |||||||| || || || Sbjct 9278 AACAACCCCAAGACCACTCACCGCCAATGTTTTTGCAGAGTCTCCCTCGGTTACAATCAG 9219 Query 169447 CGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 |||||||| | ||| || || || || ||||| |||||||| | || || || || Sbjct 9218 CGTACATTGTGAAGAACTCGCTGTTCCAGCTTTGTTGGCATCATCGAGCTTCGGTATCCC 9159 Query 169507 AGT 169509 ||| Sbjct 9158 AGT 9156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583192784499960