Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2582 152 6e-32 seq2332 138 1e-27 >seq2582 Length=22561 Score = 152 bits (168), Expect = 6e-32 Identities = 321/474 (68%), Gaps = 6/474 (1%) Strand=Plus/Minus Query 117122 GGATCAAAAGGAGGAAC-GTAGCAGCTGAACCCAGTTCCGATACCCTCTGCACCATTCAT 117180 |||| |||| ||||||| | || | || |||| || || ||||| || || ||||| | Sbjct 10426 GGATTAAAACGAGGAACCGAAGTA-CTCCACCCGGTGCCAATACCATCAGCCCCATTGAC 10368 Query 117181 CAGAATCATCGGCACGACAGGAACGTAGAACTCAGGCTCCACCTGCAGACCGTCGTCCGT 117240 |||| |||||| | ||| || ||||| |||| ||||| | || || || ||| Sbjct 10367 GAGAACCATCGGAAGGACGGGGACGTACCACTCTGGCTCAATGGACAATCCATCATCCTC 10308 Query 117241 GACGTACTTGAGCACCGCATTGTCACT--CGGATCGAATATGTTCTTGGTCCACGGTGCT 117298 || ||| ||||| ||| || |||| | ||| ||| | | ||| || Sbjct 10307 GAGGTATTTGAGAACCTTATCGTCAGTTTCGGG--GAACAAAAACCGAGTCATTTTGGCG 10250 Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||| |||||||||||||| | ||||||| |||||| || || ||||| | || Sbjct 10249 AGGCGTGTGAAAATGTAACGGGGACTTGCAGAATCCTTCCCGCCCTGCAGACGGCTCCCA 10190 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || || || || |||| | |||||||| ||| || || ||||| ||||| |||| Sbjct 10189 AACTGACCGCTGGGCTGGAGGAGGTTCACGTTATTACTCCCAACAAAATTTTGGGCCATC 10130 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | ||||| |||||||| ||||| || |||||||| || | || ||| | || Sbjct 10129 CCAATGATCGTGGACTGGAGGCTTGCCTCGCCGTGGTGATAGGCAGACTTCTCGGAGACA 10070 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 || || || |||||| ||||| || || | ||| | | |||||| || | || Sbjct 10069 TAACCACTCAACTGAGCGACCTTGATATCCTTCTTCAAATCCCTCTTGAAACATGAGAAA 10010 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGC 117592 | | ||| ||||| | |||||||| ||||| | || ||| ||||||||| Sbjct 10009 AGGATCTTTCGCTGGCCTGGCTTCAACCCATCAACAACACAAGGAATCGAACGC 9956 Score = 140 bits (154), Expect = 4e-28 Identities = 303/448 (68%), Gaps = 14/448 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| || || || || || || ||||| |||| |||||| | | ||| |||| || Sbjct 10396 CCGGTGCCAATACCATCAGCCCCATTGACGAGAACCATCGGAAGGACGGGGACGTACCAC 10337 Query 151936 TCCGGCTCCACCTGTTGA--CCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGC-- 151991 || ||||| | || | || |||||| | |||||| | ||| || ||||| Sbjct 10336 TCTGGCTCAA--TGGACAATCCATCATCCTCGAGGTATTTGAGAACCTTATCGTCAGTTT 10279 Query 151992 CGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 ||| ||| | |||||||| | || ||||| ||||| |||| || || Sbjct 10278 CGGG--GAACAAAAACCGAGTCATTTTGGCGAGGCGTGTGAAAATGTAACGGGGACTTGC 10221 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 | |||||| || || ||| || | |||||||| || ||||| ||||||||| | Sbjct 10220 AGAATCCTTCCCGCCCTGCAGACGGCTCCCAAACTGACCGCTGGGCTGGAGGAGGTTCAC 10161 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAAT---CGTGCCCTGCAGACTCGC 152168 ||| || || || ||||| || |||| || |||| |||| ||| || || || Sbjct 10160 GTTATTACTCCCAACAAAATTTTGGGCCA---TCCCAATGATCGTGGACTGGAGGCTTGC 10104 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 || ||||||||||| || | || ||| | || || || |||||| || ||||| || Sbjct 10103 CTCGCCGTGGTGATAGGCAGACTTCTCGGAGACATAACCACTCAACTGAGCGACCTTGAT 10044 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 ||| || ||| | | |||||| ||| | | ||| | ||| |||||| ||| ||||| Sbjct 10043 ATCCTTCTTCAAATCCCTCTTGAAACATGAGAAAAGGATCTTTCGCTGGCCTGGCTTCAA 9984 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGC 152316 || || || || ||||||||||||| Sbjct 9983 CCCATCAACAACACAAGGAATCGAACGC 9956 >seq2332 Length=5771 Score = 138 bits (152), Expect = 1e-27 Identities = 205/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||| || || || | || || | |||| | |||||| ||| || |||||||| Sbjct 2140 CGTGTGAAAATATAACGTGGACTTGCAGAATCCCTCCCACCTTGCAGACGGGTTCCAAAT 2199 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 || || || | ||||||||| | |||||| || || ||||| ||||||| Sbjct 2200 TGACCGCTTGGATGGAGGAGGTTCATGTTGTTACTTCCGACAAAATTTTGAGCCATCCCA 2259 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 || |||||| ||| || || || |||||||| |||||||| | || ||| | || || Sbjct 2260 ACGATCGTGGACTGGAGGCTTGCCTCACCGTGATGATACGCAGACTTCTCGGAGACATAG 2319 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || |||||| || ||||| || ||| | ||| | | |||||| ||| | | ||| Sbjct 2320 CCGCTCAACTGAGCAACCTTGATATCCTCCTTCAAATCCCTCTTGAAACATGAGAAAAGA 2379 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 | ||| |||||| ||| ||||| || || || || ||||||||||||| Sbjct 2380 ATCTTTCGCTGGCCTGGCTTCAACCCATCAACGACAGAAGGAATCGAACGC 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547152187774200