Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7817 132 4e-26 >seq7817 Length=11892 Score = 132 bits (146), Expect = 4e-26 Identities = 412/633 (65%), Gaps = 11/633 (2%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||| || || ||||| |||| | ||| ||| || || || |||| | | | Sbjct 4492 TGGGAAATGGCCTCGGCTCTCTCTTCAACTGCTCCTTGAGGGGCTCGACGTGGTTCTTAT 4433 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 |||| || ||| || ||| |||| || || ||||| | | || || || |||| Sbjct 4432 AGACATGGTAGTCACCGAGGGTGTGCACGAATTCTCCAGCCTTGAGACCACAAACTTGAG 4373 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | || | || | | ||| || || ||||| ||||| ||||| || ||||| | Sbjct 4372 CAATGAGCCGAGTCAACAAAGAATACGAAGCAATGTTGAAGGGGACCCCAAGGCCCATAT 4313 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | | |||| ||||| | | ||||| | ||||| | || | ||||| || | Sbjct 4312 CACAGGACCGTTGGTACATCAAGCACGACAATTCTCCATTCGAAACAAAGAACTGGCAAA 4253 Query 30078 TGGCGTGGCACGGAGGAAGAGCCAT----GAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 ||| || || ||||| ||||| | | | | | |||||||| || || Sbjct 4252 ACATGTGACATGGGGGAAGTGCCATTTCTGGGATCGCCGAC----GGGTTCCACGCAGAC 4197 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 30193 | |||||| || | ||| ||||||||| |||| || | | | |||||| Sbjct 4196 ATGATGATACGTCGATCTGTCGGGTTGTTCTTGATCTTTTCGATTACTTGCGCCAGCTGG 4137 Query 30194 TCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTC 30253 ||||| || || | |||||| || ||| || ||||||| ||| || || || | | Sbjct 4136 TCCACGCCTTGTCCAGTGTAGTCGGCATGCATATCAGTGTACTTTGCCCCAAAGTGGCGC 4077 Query 30254 CACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTG 30313 ||||| || || || | ||| |||||||| || | || | || | || || ||| Sbjct 4076 CACTGAAATCCATAGATCGGGCCCAGGTCCCCAACCTCACGATGATTCAAACCGGACTTA 4017 Query 30314 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCT 30373 || | || || | || || ||||| ||||| || |||||||| || | ||| Sbjct 4016 TCGAGGAACTCGCGCGACCCATTGGCATCCCAAATTCGAACCCCCTTTTCCGTCAGCGTG 3957 Query 30374 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT-TCCAAAA 30432 ||| ||| |||| ||| || ||||| ||||| ||||| | | | ||| ||||||| Sbjct 3956 TTGCCGTTGGTGGCCCCAGCGATAAACCAGAGCAGTTCCTCAGCAA-GCCCTCTCCAAAA 3898 Query 30433 GACCCTCTTGGTCGTGAGGA-GGGGAAACTGTC 30464 ||| | ||| || ||||||| ||||||| |||| Sbjct 3897 GACACGCTTCGTGGTGAGGAGGGGGAAAATGTC 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406264203650268