Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7632 116 2e-21 seq1292 113 3e-20 seq2450 111 1e-19 >seq7632 Length=1044 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 672 CCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 731 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || ||||| || || || || |||||||| || || Sbjct 732 AGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGG 791 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| ||| || || || | | | || ||||| ||| || Sbjct 792 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATAGTGTCAGAAGACTCGACC 851 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || || |||||||| || |||||||| Sbjct 852 TCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTCACGAAGATCTGCAT 898 >seq1292 Length=4421 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 283 CCTCCACGAAGGCGCAAGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 224 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || ||||| || || || || |||||||| || || Sbjct 223 AGAGTGCGACCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGG 164 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| ||| || || || | | | || ||||| ||| || Sbjct 163 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGGCTTGGATGGTGTCAGAAGACTCGACC 104 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || || ||||| || || |||||||| Sbjct 103 TCAAGGGTAATTGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 57 >seq2450 Length=27238 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| |||||||| ||||| || ||||| ||||| ||| Sbjct 7438 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAA 7379 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || || || || || || |||||||| || || Sbjct 7378 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGA 7319 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| || ||||| || | | | || ||||| ||| || Sbjct 7318 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGGCTTGGATGGTGTCAGAAGACTCGACC 7259 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 |||| ||| || || || || || || ||||| || |||||||||||| | |||| Sbjct 7258 TCCAGGGTAATTGTCTTTCCCGTCAAAGTTTTTACGAAAATCTGCATGGTTGTTGT 7203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314693816129657