Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7817 174 1e-38 >seq7817 Length=11892 Score = 174 bits (192), Expect = 1e-38 Identities = 370/545 (68%), Gaps = 7/545 (1%) Strand=Plus/Plus Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213 || || ||||| ||||||||| || || ||| || || ||| || | || || ||| Sbjct 3802 GATCGCACCGGAACGGGGACCATCGCCAAGTTTGGGACCCAGATGCGCTTCAGTCTGCGG 3861 Query 34214 GGCGA-ATTT--CCGCTGCTGACGACGAAACGTGTGTACTGGA-AGGGCGTGGTCGAGGA 34269 | || |||| || || || || ||||| ||||| | |||| ||||| || | ||||| Sbjct 3862 GATGACATTTTCCCCCTCCTCACCACGAAGCGTGTCTTTTGGAGAGGGCTTGCT-GAGGA 3920 Query 34270 GCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAA 34329 ||||| ||||| | |||||||| ||| ||| ||| || |||||| Sbjct 3921 ACTGCTCTGGTTTATCGCTGGGGCCACCAACGGCAACACGCTGACGGAAAAGGGGGTTCG 3980 Query 34330 GATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC-TCGGG 34388 || ||||| || | ||||| || || || || || ||| || || ||| ||| | Sbjct 3981 AATTTGGGATGCCAATGGGTCGCGCGAGTTCCTCGATAAGTCCGGTTTGA-ATCATCGTG 4039 Query 34389 AGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATC 34448 ||| || ||| |||||||| |||| || || |||||| | ||||||||||| |||| Sbjct 4040 AGGTTGGGGACCTGGGCCCGATCTATGGATTTCAGTGGCGCCACTTTGGGGCAAAGTACA 4099 Query 34449 GGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACA 34508 | | | || ||||| | ||||| || | |||||||||| | | || ||||| | Sbjct 4100 CTGATATGCATGCCGACTACACTGGACAAGGCGTGGACCAGCTGGCGCAAGTAATCGAAA 4159 Query 34509 CCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 | ||| ||||| || || | ||| | |||| |||||||||||| || Sbjct 4160 AGATCAAGAACAACCCGACAGATCGACGTATCATCATGTCTGCGTGGAACCCGTCGGCGA 4219 Query 34569 TCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGG 34628 |||| ||||| || ||||| || |||| | ||||| |||| || ||||||| | Sbjct 4220 TCCCAGAAATGGCACTTCCCCCATGTCACATGTTTTGCCAGTTCTTTGTTTCGAATGGAG 4279 Query 34629 AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA 34688 | |||| ||| | | || ||||| || | || ||||| | ||||| || ||||||| Sbjct 4280 AATTGTCGTGCTTGATGTACCAACGGTCCTGTGATATGGGCCTTGGGGTCCCCTTCAACA 4339 Query 34689 TTGCT 34693 ||||| Sbjct 4340 TTGCT 4344 Score = 174 bits (192), Expect = 1e-38 Identities = 370/545 (68%), Gaps = 7/545 (1%) Strand=Plus/Minus Query 6652 AGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGA 6711 |||||||||||| || ||||| | ||||| || | || ||||| || | | ||| || Sbjct 4344 AGCAATGTTGAAGGGGACCCCAAGGCCCATATCACAGGACCGTTGGTACATCAAGCACGA 4285 Query 6712 CAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 || || ||||||| || |||| ||||| | |||| || ||||| || ||||| Sbjct 4284 CAATTCTCCATTCGAAACAAAGAACTGGCAAAACATGTGACATGGGGGAAGTGCCATTTC 4225 Query 6772 AGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTT 6831 |||| || |||||||||||| |||| | ||| | || || ||||| ||| Sbjct 4224 TGGGATCGCCGACGGGTTCCACGCAGACATGATGATACGTCGATCTGTCGGGTTGTTCTT 4165 Query 6832 CAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCT 6891 | | ||||| || | | |||||||||| | || ||||| | ||||| || | | Sbjct 4164 GATCTTTTCGATTACTTGCGCCAGCTGGTCCACGCCTTGTCCAGTGTAGTCGGCATGCAT 4105 Query 6892 CCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 | |||| ||||||||||| | |||||| || || |||| |||||||| ||| || Sbjct 4104 ATCAGTGTACTTTGCCCCAAAGTGGCGCCACTGAAATCCATAGATCGGGCCCAGGTCCCC 4045 Query 6952 CTCCTCCCGA-GATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCC 7010 |||| ||| ||| || || ||| || || || || || ||||| | || |||| Sbjct 4044 AACCTCACGATGAT-TCAAACCGGACTTATCGAGGAACTCGCGCGACCCATTGGCATCCC 3986 Query 7011 AGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACA 7070 | || |||||| || ||| ||| ||| |||||||| | ||||| | Sbjct 3985 AAATTCGAACCCCCTTTTCCGTCAGCGTGTTGCCGTTGGTGGCCCCAGCGATAAACCAGA 3926 Query 7071 GCAGCTCCTCGACCACGCCCT-TCCAGTACACACGTTTCGTCGTCAGCAGCGG--AAAT- 7126 |||| ||||| | || ||||| |||| | ||||| ||||| || || || || |||| Sbjct 3925 GCAGTTCCTC-AGCAAGCCCTCTCCAAAAGACACGCTTCGTGGTGAGGAGGGGGAAAATG 3867 Query 7127 TCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTC 7186 || |||| || || | || ||| || || ||| || || ||||||||| ||||| Sbjct 3866 TCATCCCGCAGACTGAAGCGCATCTGGGTCCCAAACTTGGCGATGGTCCCCGTTCCGGTG 3807 Query 7187 CGGTC 7191 || || Sbjct 3806 CGATC 3802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448210127000880