Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2450 107 1e-18 seq1860 104 2e-17 seq1856 98.7 7e-16 seq7632 95.1 9e-15 seq5736 95.1 9e-15 seq2282 89.7 4e-13 seq6235 86.0 4e-12 seq1292 86.0 4e-12 >seq2450 Length=27238 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | || || || |||||| |||| ||||| | || Sbjct 7440 ATGCAAATTTTCGTAAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 7499 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | || ||||| ||||| ||||| |||||| | || || || Sbjct 7500 GACACCATCCAAGCCGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 7559 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || |||||||| || | || || | |||| | | |||||||||||| Sbjct 7560 CAACGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTTTCCGATTACAAC 7619 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| | || ||||| | ||| | ||||| || Sbjct 7620 ATCCAAAAGGAATCTACTCTCCACTTGGTCCTCCGTCTTCGTGGTGG 7666 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||| | || || || ||||| |||| ||||| | || Sbjct 8896 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCCTCC 8955 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | ||||| |||||||| ||||| |||||| |||| || || Sbjct 8956 GACACCATCCAAGCCGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCCCCTGACCAA 9015 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || || || || || | || |||| |||| | |||||||||||| Sbjct 9016 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 9075 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||| ||| | || ||||| ||||| | ||||| || Sbjct 9076 ATCCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGG 9122 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||||||| | || || || |||||| |||| ||||| | Sbjct 7668 ATGCAAATTTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCTTCT 7727 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | ||||| ||||| || ||||| |||||| | || || || Sbjct 7728 GACACCATCCAAGCCGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAA 7787 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || ||||| || || | || |||| |||| | |||||||||||| Sbjct 7788 CAACGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACTCTTTCCGATTACAAC 7847 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| | || ||||| | ||| | ||||| || Sbjct 7848 ATCCAAAAGGAATCGACTCTCCACTTGGTCCTCCGTCTTCGTGGAGG 7894 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || || || ||||| ||| || | || ||||| || Sbjct 8668 ATGCAAATTTTCGTCAAGACCCTCACCGGGAAGACTATCACTCTCGAAGTCGAGTCTTCC 8727 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | || ||||| || || ||||| |||||| | || || || Sbjct 8728 GACACCATCCAAGCCGTGAAACAGAAGATTCAAGACAAGGAAGGTATCCCCCCTGACCAA 8787 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || ||||| || || | || |||| |||| | |||||||||||| Sbjct 8788 CAACGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGATTACAAC 8847 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||| ||| | || ||||| ||||| | ||||| || Sbjct 8848 ATCCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGG 8894 >seq1860 Length=4765 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||| | || || || |||||| |||| ||||| | || Sbjct 2185 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATTACCCTTGAGGTCGAGTCCTCC 2126 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | || || ||||| || ||||| ||||| | || || || Sbjct 2125 GACACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGGATCCCTCCTGACCAA 2066 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || |||||||| |||||||| |||| || | | | |||||||||||| Sbjct 2065 CAACGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGGACCCTTTCCGATTACAAC 2006 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| | || || || ||||| | ||||| || Sbjct 2005 ATCCAGAAGGAATCTACTCTCCACTTAGTCTTGCGCCTTCGTGGTGG 1959 >seq1856 Length=6291 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || || || || ||| || | || ||||| || Sbjct 5972 ATGCAAATCTTCGTCAAAACCCTCACCGGTAAGACTATCACTCTCGAAGTCGAGTCTTCC 6031 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | ||| | || || || ||||| ||||| |||||| |||| || || Sbjct 6032 GATACCATCCAAGCTGTGAAGCAGAAAATCCAAGACAAGGAAGGTATTCCCCCCGACCAA 6091 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || || |||||||| |||||||| |||| |||| | | |||||||||||| Sbjct 6092 CAACGCCTCATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCCTTTCCGATTACAAC 6151 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| | || ||||| ||||| | ||||| || Sbjct 6152 ATCCAGAAGGAATCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGG 6198 >seq7632 Length=1044 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||| | || || || ||||| |||| ||||| | Sbjct 898 ATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCTTCT 839 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | ||| | || || || ||||| ||||| || || | || || || Sbjct 838 GACACTATCCAAGCCGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAA 779 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || |||||||| |||||||| |||| |||| | |||||||||||| Sbjct 778 CAACGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGTCGCACTCTTTCCGATTACAAC 719 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| | || ||||| ||||| | ||||| || Sbjct 718 ATCCAGAAGGAATCTACTCTTCACTTGGTCTTGCGCCTTCGTGGAGG 672 >seq5736 Length=2708 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || || || || ||| || | || ||||| | || Sbjct 2234 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGACTATCACTCTCGAAGTCGAGTCCTCC 2293 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | || || || ||||| ||||| |||||| |||| || || Sbjct 2294 GACACCATCCAAGCCGTGAAGCAGAAAATCCAAGACAAGGAAGGTATTCCCCCTGACCAA 2353 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || |||||||| || | || || | |||| | |||||||||||| Sbjct 2354 CAACGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 2413 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||| ||| | || ||||| ||||| | ||||| || Sbjct 2414 ATCCAGAAGGAGTCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGG 2460 >seq2282 Length=5406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | || || || ||||| |||| ||||| | || Sbjct 393 ATGCAGATCTTTGTAAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCCTCC 334 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | || ||||| ||||| ||||| |||||| | || || || Sbjct 333 GACACCATCCAAGCCGTGAAACAGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 274 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || || || || || | || || | |||| | |||||||||||| Sbjct 273 CAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTTCCGATTACAAC 214 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| | || ||||| ||||| | ||||| || Sbjct 213 ATCCAAAAGGAATCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGG 167 >seq6235 Length=3334 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || || || || ||| || | || |||||| | || Sbjct 976 ATGCAGATCTTTGTCAAGACCCTCACCGGTAAGACTATCACTCTCGAAGTCGAATCCTCC 1035 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | || || ||||| || ||||| |||||| | || || || Sbjct 1036 GACACCATCCAAGCTGTGAAGCAAAAGATTCAAGACAAGGAAGGTATCCCCCCTGACCAA 1095 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || || ||||| || || | || || | |||| | | |||||||||||| Sbjct 1096 CAACGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGCACCCTTTCCGATTACAAC 1155 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| | || ||||| ||||| | ||||| || Sbjct 1156 ATCCAAAAGGAATCTACTCTCCACTTGGTCTTGCGCCTTCGTGGTGG 1202 >seq1292 Length=4421 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||| | || || || ||||| |||| ||||| | Sbjct 57 ATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACAATTACCCTTGAGGTCGAGTCTTCT 116 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | ||| | || || || ||||| ||||| || || | || || || Sbjct 117 GACACCATCCAAGCCGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAA 176 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || |||||||| |||||||| |||| |||| | |||||||||||| Sbjct 177 CAACGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGTCGCACTCTTTCCGATTACAAC 236 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| | || ||||| ||||| | ||||| || Sbjct 237 ATCCAGAAGGAATCTACTCTTCACTTGGTCTTGCGCCTTCGTGGAGG 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355821939445983