Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1860 87.8 2e-12 seq2282 86.0 5e-12 seq5736 82.4 7e-11 seq1856 82.4 7e-11 >seq1860 Length=4765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || || ||||| || || ||||||| ||| || || | || || Sbjct 2433 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCG 2492 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || | || || ||||| | ||| | || || ||||| | Sbjct 2493 AGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCTTGG 2552 Query 39196 ATTTTCTGTTTGA--GCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||||| || | || | | | |||||| ||||| || || | || || | | Sbjct 2553 ATTTTCTGCTTCACAGCTTGG--ATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCT 2610 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||||| ||||| || ||||||||||| || Sbjct 2611 TTCCCGTCAAAGTTTTCACGAAGATTTGCATGTT 2644 >seq2282 Length=5406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| || ||||| || || || || ||||| || || ||||||| ||| || || | Sbjct 178 GCGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTGCGACC 237 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || | || || ||||| | ||| | | || || Sbjct 238 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCAGGGGGGATACCTTCCTT 297 Query 39189 GTCCATGATTTTCTGTTTGA--GCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||| |||||||||||| | || | | | || ||| ||||| || || | || Sbjct 298 GTCTTGGATTTTCTGTTTCACGGCTTGG--ATGGTGTCGGAGGACTCGACCTCAAGGGTA 355 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||||||| ||||| |||||||| ||||| Sbjct 356 ATTGTCTTTCCCGTCAAAGTTTTTACAAAGATCTGCAT 393 >seq5736 Length=2708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| || ||||| || || || ||| || || || || ||||||| ||| || || | Sbjct 2449 GCGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACC 2390 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| || || || || || | || || ||||| | ||| | | || || Sbjct 2389 ATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGGGGAATACCTTCCTT 2330 Query 39189 GTCCATGATTTTCTGTTTGA--GCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||| ||||||||| || | || | | | || ||| ||||| || || | ||| Sbjct 2329 GTCTTGGATTTTCTGCTTCACGGCTTGG--ATGGTGTCGGAGGACTCGACTTCGAGAGTG 2272 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| || || ||||| || ||||||||||| Sbjct 2271 ATAGTCTTTCCTGTGAGGGTTTTGACGAAGATTTGCAT 2234 >seq1856 Length=6291 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| || ||||| || || || || || || || || ||||||| ||| || || | Sbjct 6187 GCGCAAGACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCC 6128 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || | || || || || || || || || || ||||||| ||| | | || || Sbjct 6127 GTCTTCCAATTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATACCTTCCTT 6068 Query 39189 GTCCATGATTTTCTGTTTGA--GCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||| ||||||||| || | || | | | |||||| ||||| || || | ||| Sbjct 6067 GTCTTGGATTTTCTGCTTCACAGCTTGG--ATGGTATCGGAAGACTCGACTTCGAGAGTG 6010 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | || || || || ||||| || ||||||||||| Sbjct 6009 ATAGTCTTACCGGTGAGGGTTTTGACGAAGATTTGCAT 5972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429496761873377