Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7817 138 8e-28 >seq7817 Length=11892 Score = 138 bits (152), Expect = 8e-28 Identities = 413/633 (65%), Gaps = 11/633 (2%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||| || || ||||| |||| | ||| ||| || || || ||||| | | | Sbjct 4492 TGGGAAATGGCCTCGGCTCTCTCTTCAACTGCTCCTTGAGGGGCTCGACGTGGTTCTTAT 4433 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 |||| || ||| || |||||||| || || ||||| | | || || || |||| Sbjct 4432 AGACATGGTAGTCACCGAGGGTGTGCACGAATTCTCCAGCCTTGAGACCACAAACTTGAG 4373 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | || | || | | ||| || || ||||| ||||| ||||| || ||||| | Sbjct 4372 CAATGAGCCGAGTCAACAAAGAATACGAAGCAATGTTGAAGGGGACCCCAAGGCCCATAT 4313 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | | |||| ||||| | | ||||| | ||||||| || | ||||| || | Sbjct 4312 CACAGGACCGTTGGTACATCAAGCACGACAATTCTCCATTCGAAACAAAGAACTGGCAAA 4253 Query 27344 TGGCGTGGCACGGAGGAAGAGCCAT----GAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 27399 ||| || || ||||| ||||| | | | | | |||||||| || || Sbjct 4252 ACATGTGACATGGGGGAAGTGCCATTTCTGGGATCGCCGAC----GGGTTCCACGCAGAC 4197 Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 27459 | |||||| || | ||| ||||||||| |||| || | | | |||||| Sbjct 4196 ATGATGATACGTCGATCTGTCGGGTTGTTCTTGATCTTTTCGATTACTTGCGCCAGCTGG 4137 Query 27460 TCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTC 27519 ||||| || || | |||||| | ||| || ||||||| ||| || || || | | Sbjct 4136 TCCACGCCTTGTCCAGTGTAGTCGGCATGCATATCAGTGTACTTTGCCCCAAAGTGGCGC 4077 Query 27520 CATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTG 27579 || || || || || | ||| |||||||| || | || | || | || || ||| Sbjct 4076 CACTGAAATCCATAGATCGGGCCCAGGTCCCCAACCTCACGATGATTCAAACCGGACTTA 4017 Query 27580 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 27639 || | || || | || || ||||| ||||| || |||||||| || | ||| Sbjct 4016 TCGAGGAACTCGCGCGACCCATTGGCATCCCAAATTCGAACCCCCTTTTCCGTCAGCGTG 3957 Query 27640 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT-TCCAAAA 27698 ||| ||| |||| ||| || ||||| ||||| ||||| | | | ||| ||||||| Sbjct 3956 TTGCCGTTGGTGGCCCCAGCGATAAACCAGAGCAGTTCCTCAGCAA-GCCCTCTCCAAAA 3898 Query 27699 GACCCTCTTGGTCGTGAGGA-GGGGAAACTGTC 27730 ||| | ||| || ||||||| ||||||| |||| Sbjct 3897 GACACGCTTCGTGGTGAGGAGGGGGAAAATGTC 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369465188070599