Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramoeba_20pemaquidensis_20[genbank_20GCA_5F002151225.1_202017-05- 19] 9,329 sequences; 34,386,983 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1935 82.4 9e-11 >seq1935 Length=31306 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/158 (74%), Gaps = 9/158 (6%) Strand=Plus/Plus Query 18970 TTAGCTCAGCTGGATAGAGCAA-CGGTTTTGTAAACCG-TAGGTCGTCGGTTCAAGTCCG 19027 ||||||||||||| ||||| | ||| | || ||||| |||||||| ||||||| || Sbjct 13414 TTAGCTCAGCTGGC-AGAGCGATCGGCT--GTTAACCGATAGGTCGTAGGTTCAATCCCT 13470 Query 19028 ACATCAGGCTCTCACAT---TCCTCCTTAGTTCAGC-GGTAGAACGAACGACTGTTAATC 19083 ||| || | |||| |||||||||| ||||| || ||| ||| || ||||||| | Sbjct 13471 ACAGGTGGAGTTNACATGATTCCTCCTTAGCTCAGCTGGCAGAGCGATCGGCTGTTAACC 13530 Query 19084 GTTAAGTCCCTGGTTCGATCCCAGGAGGGGGAGTTGTT 19121 | || ||| ||||| ||||| ||| |||||| || Sbjct 13531 GATAGGTCGTAGGTTCAATCCCTACAGGTGGAGTTTTT 13568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592129342264080