Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= AC_000002.1 Length=34446 Score E Sequences producing significant alignments: (Bits) Value seq61051 104 5e-18 >seq61051 Length=235 Score = 104 bits (114), Expect = 5e-18 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 5743 TCCATTTGGTCAGAAAAGACAGTGACTCTGTTGTCTAGCTTAGTGGCAAAGCTGCCATAC 5802 ||||| ||||||||||||||| | || | |||| ||||| |||||||| || || Sbjct 1 TCCATCTGGTCAGAAAAGACAAT--CTTTTGTGTCAAGCTTGGTGGCAAACGACCCGTAG 58 Query 5803 AGGGCATTGGACAGCAGTTTGGCAATGCTTCTGAGAGTTTGGTTTTTCTCTTTATCCGCC 5862 ||||| |||||||||| ||||| ||| | || |||||||||| | | ||| || Sbjct 59 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTTGCGC--GATCGGCG 116 Query 5863 CTTTCCTTGGGCGCAATGTTAAGTTGCACGTAGTCTCTAGCCAGACACTCCCACTGGGGA 5922 | ||||||| ||| ||||| || |||||||| || | || | ||| ||| | |||| Sbjct 117 CGCTCCTTGGCCGCGATGTT-AGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGGGA 175 Query 5923 AATACTGTGGTGCG 5936 || | |||||||| Sbjct 176 AA-GCGGTGGTGCG 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110014483968752