Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= AC_000006.1 Length=35100 Score E Sequences producing significant alignments: (Bits) Value seq61051 237 4e-58 >seq61051 Length=235 Score = 237 bits (262), Expect = 4e-58 Identities = 202/242 (83%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 6000 TCCATCTGGTCAGAAAAGACTAtttttttATTGTCAAGCTTGGTGGCAAAGGAGCCATAG 6059 |||||||||||||||||||| || |||| ||||||||||||||||||| || || ||| Sbjct 1 TCCATCTGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACGACCCGTAG 58 Query 6060 AGGGCGTTGGAGAGAAGCTTGGCGATGGATCTCATGGTCTGATTTTTGTCACGGTCGGCG 6119 ||||||||||| || | |||||||||||| | || ||| || |||| | || |||||| Sbjct 59 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGGTTTT--GCGCGATCGGCG 116 Query 6120 CGCTCCTTGGCCGCGATGTTGAGCTGGACATATTCGCGCGCGACACACTTCCATTCGGGA 6179 |||||||||||||||||||| ||||| || ||||||||||| || ||| |||||||||| Sbjct 117 CGCTCCTTGGCCGCGATGTT-AGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGGGA 175 Query 6180 AAGACGGTGGTGCGCTCGTCGGGCACGATCCTGACGCGCCAGCCGCGGTTATGCAGGGTG 6239 ||| |||||||||||||| ||||||| | |||||||| ||| || | ||||||||| Sbjct 176 AAG-CGGTGGTGCGCTCG-CGGGCACCAGGTGCACGCGCCAACCGAGG-TGTGCAGGGTG 232 Query 6240 AC 6241 || Sbjct 233 AC 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112105552107428