Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq418 127 4e-24 seq3521 113 1e-19 seq207 113 1e-19 seq170 113 1e-19 seq54 113 1e-19 seq12313 102 2e-16 seq2137 102 2e-16 seq422 102 2e-16 seq301 102 2e-16 seq1429 100 6e-16 seq28555 87.8 4e-12 seq1562 87.8 4e-12 >seq418 Length=100115 Score = 127 bits (140), Expect = 4e-24 Identities = 257/377 (68%), Gaps = 11/377 (3%) Strand=Plus/Minus Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 319346 ||| | |||||| | |||||| || ||| |||||| | ||| || || || || | || Sbjct 20712 CTTGAGGATGGCTCTGTCCTTGGACTTGACACCCTCCAAGAATCCAGGGTCCGGAAGTTT 20653 Query 319347 CCACG--TGGTCTTCGTCTCGGTAAGGGCGTAGTA--ACTCGCTGATTCGGGACGCTTCT 319402 | | ||| | | || ||| || | |||||| ||| | | ||||| | ||| Sbjct 20652 GAAGGCTTGGACGT--TCGCGGAGAGCGAGTAGTAGGACTTG--GCCTCGGGGTGGGTCT 20597 Query 319403 TCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGA 319462 |||||||||| || || || |||||||| |||| ||||| | | | ||||| |||| Sbjct 20596 TCACGAACTCCGAGAGGTTACCCTTGTAGGTCTTGAGCTTGCGCT---GCTCGTAGTGGA 20540 Query 319463 TAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAA 319522 || | ||| || |||||| |||| |||||||||| ||||| || | || | | Sbjct 20539 CGATGTGCGAGCACACGTCGTCGATGAACGCGGAGTCGTGCGACACGATGATGCTTGTCA 20480 Query 319523 CGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGT 319582 ||||||| || | | ||||| | | | ||| ||||| |||||| | || | Sbjct 20479 CGTCCTTCAGACCGGTGAGGTACTTGGTGAGCCAGGCGACGTTGGACACATCCAAGTGAT 20420 Query 319583 TGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 319642 | || |||||||| || || || | | || | || |||||| ||||| || || ||| Sbjct 20419 TTGTGGGCTCGTCGAGGAGAAGGATATCGGCCTCCATGAGCATCGCACGGGCGAGCTCGA 20360 Query 319643 GTTTCATTTTCCACCCT 319659 | ||||||||||| ||| Sbjct 20359 GCTTCATTTTCCAACCT 20343 >seq3521 Length=9083 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 1568 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 1509 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1508 CCCACGGTGGGC 1497 >seq207 Length=149001 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 146444 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 146385 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 146384 CCCACGGTGGGC 146373 >seq170 Length=164710 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 134165 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 134106 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 134105 CCCACGGTGGGC 134094 Score = 87.8 bits (96), Expect = 4e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| || | Sbjct 128273 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTTGACC 128214 Query 165770 C 165770 | Sbjct 128213 C 128213 >seq54 Length=256141 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 77883 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 77942 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 77943 CCCACGGTGGGC 77954 >seq12313 Length=1061 Score = 102 bits (112), Expect = 2e-16 Identities = 68/75 (91%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 357 GCCCGTCTAGCTCAGTTTTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 298 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 297 AGCCCCACGGTGGGC 283 >seq2137 Length=14431 Score = 102 bits (112), Expect = 2e-16 Identities = 68/75 (91%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 4545 GCCCGTCTAGCTCAGTTATCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 4604 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 4605 AGCCCCACGGTGGGC 4619 >seq422 Length=105043 Score = 102 bits (112), Expect = 2e-16 Identities = 68/75 (91%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 18070 GCCCGTCTAGCTCAGTTATCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 18129 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 18130 AGCCCCACGGTGGGC 18144 >seq301 Length=122670 Score = 102 bits (112), Expect = 2e-16 Identities = 68/75 (91%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 108816 GCCCGTCTAGCTCAGTTTTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 108757 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 108756 AGCCCCACGGTGGGC 108742 >seq1429 Length=23345 Score = 100 bits (110), Expect = 6e-16 Identities = 269/404 (67%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 230211 TATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCC 230270 |||||| ||||||| |||||||| || ||||| ||| || ||| | ||| | |||| Sbjct 8199 TATTCT--TTTCCGGCAGTTTCTGTGCTATCTTCTGGTTGAAGAAGAGAGGATTAATGCT 8142 Query 230271 TGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGG 230330 ||| | | | ||||| |||||||| ||||| || |||||||| | |||| Sbjct 8141 TGGATTGGCGCAATCTAATGAGTTCATTTCCCGCGATGAAGGTCTCCACTGCGACTTCGC 8082 Query 230331 CGAGCTTATGTATTCAAAGCTCCAGAACAAGCT---ACCATTCGAGACGGTCAAACAAAT 230387 || | || || | |||| ||||| || |||| ||||| | ||| || Sbjct 8081 TTGCCTCCTTTACTCTATGCTCTCCAACAAACTGAAACCA---GAGACCCTAAAATCGAT 8025 Query 230388 CATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCT 230447 || || || || | || || ||||| || || || | || |||||| Sbjct 8024 TATCTATGATGCGGTAGCCGTAGAGAAAGAGTTTATCACAGAGGCCCTACCG-GTCGCCC 7966 Query 230448 T-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 230506 | ||||| |||||||| ||| ||| | || |||||||||||||| || || || ||| Sbjct 7965 TGATTGGAATGAACGCCGAAGCCATGAGCCAATACATCGAATTCGTCGCTGATCGACTTT 7906 Query 230507 TTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGC 230566 | | || ||||| || || || |||||| | || ||||| || | | ||||| | Sbjct 7905 TACTGGCGCTTGGGCACCCCAAGGTCTACAACGCCAAAAACCCATTCGACTGGATGGAAC 7846 Query 230567 TCATTTCGCT-TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 |||| ||| | || | | ||||| ||||| ||||| | ||||| Sbjct 7845 TCATCTCGTTGTCCA-GAAAGACGAACTTTTTCGAGAGCCGTGT 7803 >seq28555 Length=487 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 303 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 358 >seq1562 Length=20706 Score = 87.8 bits (96), Expect = 4e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 281825 GTTATT-GCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCT 281883 |||||| || ||| || |||| || |||| |||||| |||||||| || |||||| ||| Sbjct 9301 GTTATTAGCACCC-ACAAAATCTTGCGCCATGTTGACTATTGTCCCGTGCAGCGATTCCT 9243 Query 281884 CACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCA 281940 | ||||||||||| || ||||||| || || || || || ||| || ||||||| Sbjct 9242 CGCCGTGGTGATACGCCGTGTGTTCCGCGACGTACCCCGCGAGCTGCGCCACCTTCA 9186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056879506304810