Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq418 127 4e-24
seq3521 113 1e-19
seq207 113 1e-19
seq170 113 1e-19
seq54 113 1e-19
seq12313 102 2e-16
seq2137 102 2e-16
seq422 102 2e-16
seq301 102 2e-16
seq1429 100 6e-16
seq28555 87.8 4e-12
seq1562 87.8 4e-12
>seq418
Length=100115
Score = 127 bits (140), Expect = 4e-24
Identities = 257/377 (68%), Gaps = 11/377 (3%)
Strand=Plus/Minus
Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 319346
||| | |||||| | |||||| || ||| |||||| | ||| || || || || | ||
Sbjct 20712 CTTGAGGATGGCTCTGTCCTTGGACTTGACACCCTCCAAGAATCCAGGGTCCGGAAGTTT 20653
Query 319347 CCACG--TGGTCTTCGTCTCGGTAAGGGCGTAGTA--ACTCGCTGATTCGGGACGCTTCT 319402
| | ||| | | || ||| || | |||||| ||| | | ||||| | |||
Sbjct 20652 GAAGGCTTGGACGT--TCGCGGAGAGCGAGTAGTAGGACTTG--GCCTCGGGGTGGGTCT 20597
Query 319403 TCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGA 319462
|||||||||| || || || |||||||| |||| ||||| | | | ||||| ||||
Sbjct 20596 TCACGAACTCCGAGAGGTTACCCTTGTAGGTCTTGAGCTTGCGCT---GCTCGTAGTGGA 20540
Query 319463 TAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAA 319522
|| | ||| || |||||| |||| |||||||||| ||||| || | || | |
Sbjct 20539 CGATGTGCGAGCACACGTCGTCGATGAACGCGGAGTCGTGCGACACGATGATGCTTGTCA 20480
Query 319523 CGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGT 319582
||||||| || | | ||||| | | | ||| ||||| |||||| | || |
Sbjct 20479 CGTCCTTCAGACCGGTGAGGTACTTGGTGAGCCAGGCGACGTTGGACACATCCAAGTGAT 20420
Query 319583 TGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 319642
| || |||||||| || || || | | || | || |||||| ||||| || || |||
Sbjct 20419 TTGTGGGCTCGTCGAGGAGAAGGATATCGGCCTCCATGAGCATCGCACGGGCGAGCTCGA 20360
Query 319643 GTTTCATTTTCCACCCT 319659
| ||||||||||| |||
Sbjct 20359 GCTTCATTTTCCAACCT 20343
>seq3521
Length=9083
Score = 113 bits (124), Expect = 1e-19
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 1568 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 1509
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1508 CCCACGGTGGGC 1497
>seq207
Length=149001
Score = 113 bits (124), Expect = 1e-19
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 146444 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 146385
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 146384 CCCACGGTGGGC 146373
>seq170
Length=164710
Score = 113 bits (124), Expect = 1e-19
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 134165 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 134106
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 134105 CCCACGGTGGGC 134094
Score = 87.8 bits (96), Expect = 4e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| || |
Sbjct 128273 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTTGACC 128214
Query 165770 C 165770
|
Sbjct 128213 C 128213
>seq54
Length=256141
Score = 113 bits (124), Expect = 1e-19
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 77883 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 77942
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 77943 CCCACGGTGGGC 77954
>seq12313
Length=1061
Score = 102 bits (112), Expect = 2e-16
Identities = 68/75 (91%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 357 GCCCGTCTAGCTCAGTTTTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 298
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 297 AGCCCCACGGTGGGC 283
>seq2137
Length=14431
Score = 102 bits (112), Expect = 2e-16
Identities = 68/75 (91%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 4545 GCCCGTCTAGCTCAGTTATCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 4604
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 4605 AGCCCCACGGTGGGC 4619
>seq422
Length=105043
Score = 102 bits (112), Expect = 2e-16
Identities = 68/75 (91%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 18070 GCCCGTCTAGCTCAGTTATCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 18129
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 18130 AGCCCCACGGTGGGC 18144
>seq301
Length=122670
Score = 102 bits (112), Expect = 2e-16
Identities = 68/75 (91%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGT---CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 108816 GCCCGTCTAGCTCAGTTTTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 108757
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 108756 AGCCCCACGGTGGGC 108742
>seq1429
Length=23345
Score = 100 bits (110), Expect = 6e-16
Identities = 269/404 (67%), Gaps = 12/404 (3%)
Strand=Plus/Minus
Query 230211 TATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCC 230270
|||||| ||||||| |||||||| || ||||| ||| || ||| | ||| | ||||
Sbjct 8199 TATTCT--TTTCCGGCAGTTTCTGTGCTATCTTCTGGTTGAAGAAGAGAGGATTAATGCT 8142
Query 230271 TGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGG 230330
||| | | | ||||| |||||||| ||||| || |||||||| | ||||
Sbjct 8141 TGGATTGGCGCAATCTAATGAGTTCATTTCCCGCGATGAAGGTCTCCACTGCGACTTCGC 8082
Query 230331 CGAGCTTATGTATTCAAAGCTCCAGAACAAGCT---ACCATTCGAGACGGTCAAACAAAT 230387
|| | || || | |||| ||||| || |||| ||||| | ||| ||
Sbjct 8081 TTGCCTCCTTTACTCTATGCTCTCCAACAAACTGAAACCA---GAGACCCTAAAATCGAT 8025
Query 230388 CATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCT 230447
|| || || || | || || ||||| || || || | || ||||||
Sbjct 8024 TATCTATGATGCGGTAGCCGTAGAGAAAGAGTTTATCACAGAGGCCCTACCG-GTCGCCC 7966
Query 230448 T-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 230506
| ||||| |||||||| ||| ||| | || |||||||||||||| || || || |||
Sbjct 7965 TGATTGGAATGAACGCCGAAGCCATGAGCCAATACATCGAATTCGTCGCTGATCGACTTT 7906
Query 230507 TTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGC 230566
| | || ||||| || || || |||||| | || ||||| || | | ||||| |
Sbjct 7905 TACTGGCGCTTGGGCACCCCAAGGTCTACAACGCCAAAAACCCATTCGACTGGATGGAAC 7846
Query 230567 TCATTTCGCT-TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609
|||| ||| | || | | ||||| ||||| ||||| | |||||
Sbjct 7845 TCATCTCGTTGTCCA-GAAAGACGAACTTTTTCGAGAGCCGTGT 7803
>seq28555
Length=487
Score = 87.8 bits (96), Expect = 4e-12
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 303 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 358
>seq1562
Length=20706
Score = 87.8 bits (96), Expect = 4e-12
Identities = 91/117 (78%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 281825 GTTATT-GCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCT 281883
|||||| || ||| || |||| || |||| |||||| |||||||| || |||||| |||
Sbjct 9301 GTTATTAGCACCC-ACAAAATCTTGCGCCATGTTGACTATTGTCCCGTGCAGCGATTCCT 9243
Query 281884 CACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCA 281940
| ||||||||||| || ||||||| || || || || || ||| || |||||||
Sbjct 9242 CGCCGTGGTGATACGCCGTGTGTTCCGCGACGTACCCCGCGAGCTGCGCCACCTTCA 9186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1056879506304810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |