Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq2320 253 4e-63 >seq2320 Length=11620 Score = 253 bits (280), Expect = 4e-63 Identities = 647/976 (66%), Gaps = 64/976 (7%) Strand=Plus/Plus Query 2286 ACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTC 2345 ||||| |||||| ||| || | || || | || || ||||| |||||| || || Sbjct 8645 ACGCCCTGGCCGATGCCTGTCGTATCGATCGCCATATAGGCGACGTTGTATTGCTGCGTG 8704 Query 2346 AGTTTGCGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCACTGGTGGCGCTCC 2405 | ||| || | || ||||| || | || |||||||| ||| ||| | | Sbjct 8705 ATCGCGCGTATCGCCTCGGCCTGTGCCTCGAAATCCATGCCGCGCCATTGGCACTTGTGC 8764 Query 2406 AGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGACGCAC---CCGGCG 2462 |||| ||| |||||||| |||| ||| ||||||| |||| |||||| | ||||| Sbjct 8765 AGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGGTGCGA---CGACGCTCAAGCCGGCC 8821 Query 2463 CTGTCGCCAGTGTGTGACGGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAACGGATGG 2522 ||| || | | | ||||| ||||| | ||| | |||||| ||||||| || Sbjct 8822 GAGTCACCCGATAGCGCTGGGTCATAGCCGACCCACAGCGGGCGATAGCCGAAAGGG--- 8878 Query 2523 TCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCATGCAGCGCTGCAGC 2582 |||||| | ||||||||||| ||||| | Sbjct 8879 --------CGGGGCAA-----------------------TCGACCATGCAACGCTGTAAA 8907 Query 2583 TCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACATAAACAGGTTTTTA 2642 ||| ||| |||||| | ||||||| ||||||||| ||||| |||||| ||||| || Sbjct 8908 TCCGCGAGCGGGAAAATCGACGCTGTATCGTCGATAAACTGGCACATCAACAGATTGGCG 8967 Query 2643 AAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAGGGTGCAGCCACCG 2702 | |||| | |||| ||| | || | | ||| ||||||||| ||| || ||| Sbjct 8968 TATTCCTGCGCGCTGTATTCAAGACGTAGCTCGCCGATATCGAACAGGTCGCACCCGCCG 9027 Query 2703 GCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCCA 2762 || | ||| ||||| | ||| || ||||| ||||| || | ||| |||||||| |||| Sbjct 9028 GCGACGGCATCCTCGACGGTCACGATCTGGCGCCATTGCCTATCCTCGCAGAGACGGCCG 9087 Query 2763 CCGGCGAGCGCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAAT--ACGGCTGCGCC 2820 ||||||||||| | | | | ||| | ||||| | | || || ||||| Sbjct 9088 CCGGCGAGCGCCTTGCGCGTTACGTCCA----GATGCAGATG---ATCGACCTTTGCGCG 9140 Query 2821 CCTT--GTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTTGAGGG 2878 | | |||||| |||||||| |||||||| ||| ||| | || | | | || || Sbjct 9141 GCCTCGGTTGAAGTGCTCGCCACTCCAGAAGGTATAGGCGGCATGTCCAATGCTCGACGG 9200 Query 2879 TGTCGAAAAGTAGGTTGAGCGC-AGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTTGC 2937 || || || |||||| | | | | || ||| ||||||||||| ||||| || Sbjct 9201 CGTGGAGAAATAGGTTTTTCTCCATTTTTTTGTGCATCGCCATGCCCGACGCGACCTTAT 9260 Query 2938 GCAGCTTCTGAAAATTCGGGA-TCCAGAATATTTCATCGACATACAGGTCGCCGTTATGG 2996 ||||| |||| | || | |||| || ||| |||| ||| | | ||||| || | Sbjct 9261 TCAGCTCGCGAAA-TCCGCCAGTCCAAAAGTATTCGTCGAAATAGAAATTGCCGTGATAG 9319 Query 2997 CTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCAATG 3056 ||||| || ||| | ||| || || ||||| | | | || | || | ||| | Sbjct 9320 CTCTGTGCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAACGTCGCCTCATTC--GGCAA-G 9376 Query 3057 ACAATCGGGTCGCCGGTCAGGTCGACGTCAAC---CAGTCGCGCAAACTGTATGATGTAT 3113 | ||||||||||| || || ||||| || | | ||||||||||| ||||| Sbjct 9377 ATGATCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTCGCGCGCAAACTGGCAAATGTAC 9436 Query 3114 TCGCG-GAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGT 3172 | ||| ||| |||| || || | || |||||||||||||||||||| | ||||||| Sbjct 9437 T-GCGTGAAAACGTGCGCGTGTGCCTTGCTGGCCGACAGAAAAATCTGATCGCGGCCGGT 9495 Query 3173 CTTGAGTGC-TCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGG 3231 | ||| || ||| ||||||||| || | ||||| |||||||||| ||||| || | Sbjct 9496 CGTGATCGCGTCG-TCCAGTGCCTCTCGTGCGAAATACCACGTCGCGCCGATCTGCCGCG 9554 Query 3232 ATTTGAGAATGTCGCG 3247 | |||||||||| ||| Sbjct 9555 ACTTGAGAATGTTGCG 9570 Score = 197 bits (218), Expect = 3e-46 Identities = 542/812 (67%), Gaps = 30/812 (4%) Strand=Plus/Plus Query 362 CCCATGAGCTGGAACGGTACGCGGTGCGCGTCCATCAGGTCGGCG-GCGCTGGCTTTCTT 420 ||||||||||| || | ||| ||||| | | || |||| || ||| || | ||||| Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCGCGCG-TGACATTCTT 7510 Query 421 GATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTAATGCCGTC 480 ||| |||||||| || || || | | ||||||| | || | || | || ||||| Sbjct 7511 GATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTC 7570 Query 481 CGGTTTTCCATTGGGAGCGTAGAAAAACAGGTTTTTAAAATTGCCGAGCCCTTTCGAGTT 540 || || || || ||||| | ||||||||| |||||||| |||| || ||| Sbjct 7571 TTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTT 7630 Query 541 GCGCATCGCCTCGCGCAGCGATTCGACGTCGG-TCGCGCTCTGCGCCGGGTCGGTCACAT 599 || ||||||||||| ||||| |||| | ||| |||||||| || |||| | Sbjct 7631 TTTCAACGCCTCGCGCATGTTGTCGACATCGGTTTGCG-ACTGCGCCGCATCCGTCATGT 7689 Query 600 ACATGATGTAACCCGCATGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTTGCGG 659 ||| ||| | ||||| |||| || |||| ||||||| ||||| || ||||| || | Sbjct 7690 ACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGCCG 7749 Query 660 ATTCATTCAGCCAGGCGGAATTAAGCGCGCTGAGATATTCGGGCAGGCCGTAAATCTCCT 719 | || |||| ||| || | | || |||| |||||||||||||| ||| || | ||||| Sbjct 7750 ACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTCCT 7809 Query 720 GATTAATGTCGGGCTCCAGCAGGTGAAACACGGTATCAGGCGCGAATTCATGCGGCAGAG 779 |||||||||| || |||| || |||| |||||| | | |||||| || |||| | | Sbjct 7810 GATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAACTCGTGCGAC-GCC 7868 Query 780 TG----AAGTTTTCCACAAACCAGAAAACCGAATCGTCGACCCCGCGGCGGGTGTATTTG 835 || ||| || | |||| | ||| | ||||||| |||| ||| Sbjct 7869 TGCCACCCGTTGACCTGA---TAGAAGCGCTGTAGGTCCGTCGCGCGGCGCATGTACTTG 7925 Query 836 GCCGGTG-AGGCCAGTA-GCTTGATTAGCTGGCCG-GTAAC--GCTGTGGCGCTGCTCAA 890 || || | | || | | || ||| | ||| || | | | | ||| |||||| Sbjct 7926 GCTGGCGCACGCTCGAACGC-----AAGCGGCCCGCCTAGCCGGTTCTTTCGCAGCTCAA 7980 Query 891 GAAAGGCGTTGCCGAATACCAGATAGTCGAGCGCAAAGCGGCTGAAATCCTGACGGGACA 950 || | | |||||||| || | |||||||| | ||| | | || | | Sbjct 7981 GATACCCATTGCCGAACGTGAGGAAATCGAGCGCCCACTTATCGAACACTTCGCGCGTGA 8040 Query 951 GCAGCGGGTGCGGGATGTAGGTGCTCGCGAGCACGTTGCGCTTAACGTAAATCGGTGAGC 1010 ||| | |||||| ||| | || || |||||||| || || | ||| |||| |||| Sbjct 8041 GCAACCTGTGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGAGC 8100 Query 1011 TGTGATGTACAGCAGAGCGCAGGCTCTTTGCCAGCCCGGAGAAGCTGACCGGCGGCTCGT 1070 |||||| || | | ||| | | || ||||| || || | |||||||||||| Sbjct 8101 CGTGATGGACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTCGA 8160 Query 1071 ACCATTTGCCGTTACTGATGCAC---TCGACATAATCCAGAATGTC-GCGCTTATCGAGT 1126 |||| |||||| | || ||| ||||| || || ||||| || |||| || | | Sbjct 8161 ACCAGTTGCCG--GCCGA-CCACGTTTCGACGTAGTCAAGAATCTCGGCGC-GGTCCATT 8216 Query 1127 ACCGGCACTGGCTCGCCAAAGGTGAACGCCTC 1158 || ||||| | ||||| |||||||| ||||| Sbjct 8217 ACTGGCACCGCGTCGCCGAAGGTGAAGGCCTC 8248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97794205029884