Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_001454.1 Length=34214 Score E Sequences producing significant alignments: (Bits) Value seq61051 172 1e-38 >seq61051 Length=235 Score = 172 bits (190), Expect = 1e-38 Identities = 186/239 (78%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 5756 TCCATTTGGTCAGAAAATACAAtttttttGTTATCAAGTTTGGTAGCAAAGGATCCATAG 5815 ||||| ||||||||||| ||||| |||| | ||||| ||||| ||||| || || ||| Sbjct 1 TCCATCTGGTCAGAAAAGACAATCTTTTG--TGTCAAGCTTGGTGGCAAACGACCCGTAG 58 Query 5816 AGGGCGTTGGAGAGCAGTTTGGCAATGGAACGCAGTGTTTGGtttttttCGCGGTCGGCA 5875 ||||||||||| |||| ||||| ||||| ||||| |||||| |||| |||| ||||| Sbjct 59 AGGGCGTTGGACAGCAACTTGGCGATGGAGCGCAGGGTTTGG--TTTTGCGCGATCGGCG 116 Query 5876 CGCTCCTTGGCGGTGATATTAAGATGAACGTACTCTTTTGCCACGCAGCGCCACTCGGGA 5935 ||||||||||| | ||| || || || ||||| || || ||||| ||||| |||||| Sbjct 117 CGCTCCTTGGCCGCGATGTT-AGCTGCACGTATTCGCGCGCAACGCACCGCCATTCGGGA 175 Query 5936 AAGACAGTGGCGCGCTCGTCGGGAAGCAACCGCACATGCCAGCCCCGGTTGTGCAGTGT 5994 ||| | |||| ||||||| |||| | || |||| |||| || || ||||||| || Sbjct 176 AAG-CGGTGGTGCGCTCG-CGGGCACCAGGTGCACGCGCCAACCGAGG-TGTGCAGGGT 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109272698329344