Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1429 100 3e-16 seq612 89.7 6e-13 >seq1429 Length=23345 Score = 100 bits (110), Expect = 3e-16 Identities = 126/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATC 24314 || || ||||| || ||||| || | |||||| || || || | | || | |||||| Sbjct 7528 ATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCA-AAGCTTCCCTCT--TGTATC 7584 Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 ||| | | |||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 7585 CACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATAGCATTGAAC 7644 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || || |||||| | | ||| | ||||| || |||||||||||| Sbjct 7645 AGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACTA 7695 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || ||||| || |||||||| ||||| ||||| || || || | |||||| | ||| Sbjct 7476 TCGGAGTGAATATTCTCAATGGCGATTTGGAATCCATAAAAGCAGCGAGCCTCAGGGATC 7417 Query 24492 TGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||||||||| | || || || ||| | || |||||||| ||||| |||||||| || Sbjct 7416 TGTACTTCT-TGCATGAAACGAGTTGCAAGGTTCTCATTCACAATTCCATCACTGGCAGC 7358 Query 24551 AAAAAACGC 24559 ||| || || Sbjct 7357 AAAGAAAGC 7349 >seq612 Length=73199 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||||| || || | |||| ||| || ||||| |||||||| || | |||||| || Sbjct 24011 GACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAGTGCGTAG 24070 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| |||| | | || ||||| || || || ||||| |||||||||||| | Sbjct 24071 AATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAGGAAAGAT 24130 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTA 54156 ||||| |||| |||||| ||||||| ||| Sbjct 24131 ATAATGTCAGCATGCCAGGGTTCCAGGTA 24159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593204416535760