Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6776 116 3e-21 seq22 113 4e-20 seq62579 96.9 3e-15 seq30454 82.4 6e-11 seq146 82.4 6e-11 >seq6776 Length=2740 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| ||||||| Sbjct 1439 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1380 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||||||| || Sbjct 1379 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1320 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || | |||||| Sbjct 1319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACC 1260 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| | || ||||||||||| | ||| || || || || ||||| Sbjct 1259 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 >seq22 Length=338851 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||||| ||||| ||||||||||||||||| || ||||| | Sbjct 331301 TTCCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGG 331360 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | | ||||| || || || || || | ||||| | || ||||| || Sbjct 331361 AGAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGG 331420 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||||| ||||| ||| |||||| | ||| Sbjct 331421 GGATTCCTTCCTTGTCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGA 331480 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| |||||||| ||||| | || ||||| || ||||||||| Sbjct 331481 CCTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATT 331530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | |||||||| ||||| ||| ||||||||| ||||| ||||| Sbjct 330891 GTTGCCTCCACGAAGGCGGAGCACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTC 330950 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||| | ||||||| ||||| || || || | || | | || ||||| Sbjct 330951 GGAGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGG 331010 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||||||||||| |||||| ||||| ||| ||||| | ||| Sbjct 331011 GGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTCTC 331070 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTG 21172 ||| | ||| ||||||||||| || || || || || || || || Sbjct 331071 TACTTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | || |||||||| || ||||| ||||| | Sbjct 331865 TTCCTCCACGAAGGCGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 331924 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | | ||||| ||||| ||||| || | ||||| | || ||||| || Sbjct 331925 AGAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGG 331984 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||||| ||||| ||| |||||| | ||| Sbjct 331985 GGATTCCTTCCTTGTCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGA 332044 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTG 21172 |||| || || |||||||| || | || ||||| || || || Sbjct 332045 CCTCCAACGTTATAGTCTTGCCAGTGAGAGTCTTGACGAAGATCTG 332090 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | ||||||||||| || ||||| ||||| Sbjct 331529 TTCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 331588 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | | ||||| ||||| || || ||| | || | | ||| ||||| || Sbjct 331589 TCAAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGG 331648 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| |||||| ||||| ||| |||||| | ||| Sbjct 331649 GGATGCCCTCCTTGTCTTGGATCTTGGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGA 331708 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATAT 21169 || | || |||||||| ||||| || || ||||| || || Sbjct 331709 CCTCTAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAAT 331751 >seq62579 Length=228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| ||||||| Sbjct 77 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 136 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||||||| || Sbjct 137 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 196 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||| |||||||| |||||| Sbjct 197 ATGCCCTCCTTGTCCTGGATCTT 219 >seq30454 Length=461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | ||||||||||||||||| || ||||| | Sbjct 12 TTCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGG 71 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | | ||||| ||||| ||||| ||| | || | | || ||||| || Sbjct 72 AGAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGG 131 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC-CGACAGTATCACCGGGCTCC 21125 | | ||||||||||| ||| || || | ||| | ||| ||| ||| | ||| Sbjct 132 GAATTCCTTCCTTGTCCTGAATC-TTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCA 190 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATAT 21169 || | |||||| ||||| || || | || ||||| || || Sbjct 191 ACCTCAAGGGTAATAGTCTTACCAGTGAGGGTCTTGACGAAGAT 234 >seq146 Length=178297 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | |||||||||||||| ||||| ||||| | Sbjct 157037 TTCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 157096 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | | ||||| || || ||||| ||| |||| | | || ||||| || Sbjct 157097 AGAGGGTGCGTCCATCCTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCGGGGG 157156 Query 21067 GCACGCCTTCCTTGTCGGCGATCTT 21091 | | ||||||||||| |||||| Sbjct 157157 GGATTCCTTCCTTGTCCTGGATCTT 157181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421900570906892