Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq2320 161 2e-35 >seq2320 Length=11620 Score = 161 bits (178), Expect = 2e-35 Identities = 285/408 (70%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 356 CCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAGGTCAGCGGCGC-TGGCTTTTTT 414 ||||| | ||| ||||||||| ||||| | |||| ||| || ||| || | || || Sbjct 7452 CCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCG-CGCGTGACATTCTT 7510 Query 415 GATATTaaaaaaaTCGTCCTTCGTCGCCACTTCACTGAGGGGGATAATTTTAATGCCGTC 474 |||||| ||||| ||||| |||| || || || | ||| || | | || ||||| Sbjct 7511 GATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTGGATACCGTC 7570 Query 475 GGCTTTCCCCTGTGGGGCATAGAGAAACAGGTTTTTAAAGTTGT-TGCGGCCTTTCGACT 533 || || | || || || | ||||||||| || ||| || |||| | | Sbjct 7571 TTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCCCTTGCTGTT 7630 Query 534 TGACCATGTTTTCGCGAAGCATTTCGATATCG--TTGCGATCCTGCACGGCATCGGTGAC 591 | | | | | |||| | | |||| |||| |||||| |||| | ||||| || | Sbjct 7631 TTTCAACGCCT-CGCGCATGTTGTCGACATCGGTTTGCGA--CTGCGCCGCATCCGTCAT 7687 Query 592 ATACATGATGTATCCGGCATGTGCGCCATTTTCGTAATACTTGCGGCGGAACAACGTGGC 651 |||| ||| | || || || | ||||| ||||||||| ||||| || | ||| || Sbjct 7688 GTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAGCGTCGC 7747 Query 652 CGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTC 711 |||||| |||| ||| || | || ||||||| ||||||||| |||| ||| |||| ||| Sbjct 7748 CGACTCGTTCAACCATGCCGCGTGCAGGGCGCCGAGATATTCGGGCAAGCCATACACCTC 7807 Query 712 CTGATTAATATCCGGCTCCAGCAGGTGAAACACGGAGCCGGGCGCGAA 759 ||||||||| ||||| |||| || |||| ||||| |||| |||||| Sbjct 7808 CTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAA 7855 Score = 159 bits (176), Expect = 7e-35 Identities = 816/1286 (63%), Gaps = 69/1286 (5%) Strand=Plus/Plus Query 1288 AGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCC 1347 || ||||||| | ||||||||| ||||| ||||| | | || |||| | ||||| || Sbjct 8384 AGCGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCGTTACGGCTCGCT 8443 Query 1348 TCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAGCTG 1407 ||||| ||| | | |||||| |||||||| ||||| || ||||| ||||| Sbjct 8444 TCATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGATTGC 8503 Query 1408 GTGATGTCGGTGGCGCTGACGTCGTATTCCAGACAGCCACGGCGGATAAC-GTCTTTTGC 1466 | | ||| || | | | ||| |||| || | ||| | ||| || | | || Sbjct 8504 GCTAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGATCACCGACAA--GC 8561 Query 1467 CTT-GAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCACGCGCGGCGGGA 1524 ||| |||||||| |||| || | ||| |||| ||| || | |||| ||| Sbjct 8562 CTTTGAGCACCAG-GCGGCCCTTAACTTCTGGCGAATAGTTGAGCGCGACCGCGTTCGGA 8620 Query 1525 TAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATG 1584 |||||| | |||||||| | ||||| |||| ||| || | ||| || | || Sbjct 8621 TAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCGTATCGATCGCCATA 8680 Query 1585 TATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAAGTCC 1644 || |||||||||||| | |||| ||| || | || ||||| | | || ||| Sbjct 8681 TAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCTGTGCCTCGAAATCC 8740 Query 1645 ATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGT 1704 ||||| ||| ||| | || | | || ||||| || | |||| |||||||| Sbjct 8741 ATGCCGCGCCATTGGCACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCGCCGGCGGT 8800 Query 1705 GCCAGTACCACGC---ATCCGGCGCTGTCGCCACGGT-GTGACGGGTCGTAACCAATCCA 1760 || | | |||| | ||||| ||| || || | | | ||||| || || | ||| Sbjct 8801 GCGA---CGACGCTCAAGCCGGCCGAGTCACC-CGATAGCGCTGGGTCATAGCCGACCCA 8856 Query 1761 TACCGGGCGGGAGCCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCCAG 1820 | |||||| ||||||| || || |||| Sbjct 8857 CAGCGGGCGATAGCCGAAAGGGCGGG--GCAA---------------------------- 8886 Query 1821 CGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTCAAC 1880 ||||||||||| || || | ||| ||| |||||| | ||| || | ||||| | Sbjct 8887 ----TCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTGTATCGTCGAT 8942 Query 1881 AAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTC 1940 ||| | ||||| ||||| || | || | ||||||| ||| | |||| | Sbjct 8943 AAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTAGCTCGCC 9002 Query 1941 AATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGTCGCCA 2000 || |||||||| ||| ||||| | ||| ||||| | ||| || ||||| ||||| Sbjct 9003 GATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCTGGCGCCA 9062 Query 2001 CTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATTTCCAC 2060 || | ||| | |||||| | || ||||| || || || | | ||||| | | || Sbjct 9063 TTGCCTATCCTCGCAGAGACGGCCGCCGGCGAGCGCCTTGCGCGTTACGTCCAGATGCA- 9121 Query 2061 GCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACGGGTAGGC 2120 | | || | | ||||| || ||||| || | || || |||||| | ||||| Sbjct 9122 --GATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGAAGGTATAGGC 9179 Query 2121 GTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGC-GCAGGTGACTCTGTGAGG 2179 | | || | | | ||||| |||||||||||||| | || | | || | Sbjct 9180 GGCATGTCCAATGCTCGACGGCGTGGAGAAATAGGTTTTTCTCCATTTTTTTGTGCATCG 9239 Query 2180 CCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGA-TCCAGAAAATCTCATCG 2238 |||| || || || |||||| ||| | | |||| || | |||| || || ||| Sbjct 9240 CCATGCCCGACGCGACCTTATTCAGCTCGCG-AAATCCGCCAGTCCAAAAGTATTCGTCG 9298 Query 2239 ACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGT 2298 | || | | ||||| || ||||| |||||| | ||| ||||| ||||| | Sbjct 9299 AAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCTAGAAAGCGTAAC 9358 Query 2299 TTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAG---GTCAACGTCAACCAGA 2355 | |||| | ||| || || |||||||| || || || | || || | || Sbjct 9359 GT--CGCC-TCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACATCGGCGGCCTCG 9415 Query 2356 CGGGCAAA--GGCGATGATGTATTCGCG-GAACACATACGCCTGTGTTTTACTGGCCGAC 2412 || ||||| ||| | ||||| | ||| ||| || | ||| |||| || ||||||||| Sbjct 9416 CGCGCAAACTGGCAA--ATGTACT-GCGTGAAAACGTGCGCGTGTGCCTTGCTGGCCGAC 9472 Query 2413 AGAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAA 2472 ||||||||||| | | ||||| | | || ||| ||||| || | ||||| Sbjct 9473 AGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGTGCGAAATAC 9532 Query 2473 AACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCA 2532 |||||||||| ||||| || || || || || | ||| ||| ||| | |||| Sbjct 9533 CACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCGCGTGC---GCTGATGCCCTTGC 9589 Query 2533 CGATACCAGTGCAGCTGATAGTCGAA 2558 ||||||||| | ||||||||||| Sbjct 9590 CGATACCAGACCTTTTGATAGTCGAA 9615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107287142803170