Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6776 127 2e-24 seq146 98.7 1e-15 seq22 91.5 2e-13 seq67664 86.0 7e-12 seq40448 86.0 7e-12 seq62579 84.2 2e-11 >seq6776 Length=2740 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || | || || || | Sbjct 1427 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 1368 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 1367 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1308 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| || | || ||| Sbjct 1307 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 1248 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 1247 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 >seq146 Length=178297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| ||||||||||| || || || || |||| || Sbjct 157699 CACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTC 157758 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| |||||||| ||||| ||||| ||||| | || | | |||||||| | | Sbjct 157759 GAGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGT-CTT 157817 Query 43094 GATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | ||||| |||| || | | ||||| |||| || || || | |||||||| Sbjct 157818 GAATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTC---TCGACCTCCAACGTGATGG 157874 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 | || || || || || || ||||| || |||| Sbjct 157875 TCTTTCCAGTGAGTGTTTTCACAAAAATCTGCA 157907 >seq22 Length=338851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | || | |||||| ||||| ||| |||||||||||||||||| || | Sbjct 331302 TCCTCCGCGAAGGCGAAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGA 331361 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || || ||||| || ||||| || || || || ||||| | || Sbjct 331362 GAGGGTGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGG 331421 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||||| ||| ||| || | || | | || || |||| || Sbjct 331422 GATTCCTTCCTTGTCTTGGATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTC---TC 331478 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || | |||||||| || || || || ||||| || |||||||||||| Sbjct 331479 GACCTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATT 331530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| |||||||||||||| || ||||| || | || || || |||| || Sbjct 330912 CACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTC 330971 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || | || || ||||| | || | | ||||||||| Sbjct 330972 GAGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTG 331031 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 ||| || || | || | | || || |||| || || |||| |||||||| Sbjct 331032 GATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTC---TCTACTTCGAGGGTGATGGT 331088 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTG 43180 ||||| || | ||||| || ||||| || Sbjct 331089 CTTGCCAGTCAAGGTCTTCACGAAGATCTG 331118 >seq67664 Length=207 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 19 AAAAGTGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 78 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||||||||||| Sbjct 79 TAACCACTATACTACCGAGGAT 100 >seq40448 Length=357 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 144 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 85 Query 60131 CCGAG 60135 ||||| Sbjct 84 CCGAG 80 >seq62579 Length=228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || | || || || | Sbjct 89 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 148 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 149 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 208 Query 43089 TCCATGATTTT 43099 ||| ||| || Sbjct 209 TCCTGGATCTT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571319496836360