Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq7990 91.5 5e-14 seq5505 86.0 2e-12 >seq7990 Length=2043 Score = 91.5 bits (100), Expect = 5e-14 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 41457 CTTCGACAGGCAGATATCGAAGTG-CTCCTTGATGGTCCCGGCATGCTGAATCCACTTCC 41515 ||| |||||||| || ||| |||| || || | |||||| | |||| ||| || | Sbjct 1875 CTTGGACAGGCAAATGTCGTAGTGGCTGTGCGACGTCCCCGGCTT-CTGATGCCATTTGC 1933 Query 41516 GCTGAACACCGATCTTGTCTGCCATTGCGAGCAGTTCCTCGGTCGTGTCCGCGAGCATGT 41575 | || ||||| | ||||| ||| ||| ||||||| |||||||||| ||||| Sbjct 1934 GGGCGACGCCGATGCGAGCGGCCATCGCGTGCAATTCCTCGTCAGTGTCCGCGACCATGT 1993 Query 41576 GGCACATCTTCATGCGGCCAAACGTTGCGTTCATGTCGTCGACGTAAAC 41624 | |||||| ||||||||| || | ||| ||||||||||||||| || Sbjct 1994 GACACATCACCATGCGGCCGAAGTTGGCGCGCATGTCGTCGACGTAGAC 2042 >seq5505 Length=3861 Score = 86.0 bits (94), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 31095 GAACACATTGCCGACGATGAACCGGTGACCTCCGTTGCGCAGAGTGAAGCCGCGCCACTT 31154 |||||| |||||||||||||| || | || |||||| | ||||| ||| |||||| Sbjct 3647 GAACACGTTGCCGACGATGAAGCGCCGGCCGCCGTTGACCCTCGTGAAACCGATCCACTT 3706 Query 31155 GCGTACCGTTGCATCGTCGATGCTGGCGTCCGCGGTGCTTGGGTTGA 31201 ||| ||||| || ||||||| | ||||||| || || |||||||| Sbjct 3707 GCGCACCGTCGCGTCGTCGAGGGTGGCGTCGGCCGTTGATGGGTTGA 3753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180292278598872