Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6776 127 2e-24 seq2782 123 2e-23 seq146 123 2e-23 seq22 114 1e-20 seq66879 105 5e-18 seq62579 89.7 4e-13 >seq6776 Length=2740 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 1421 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTCC 1362 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 1361 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 1302 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||||| | ||||||||| Sbjct 1301 ATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTG 1242 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| |||||||| ||||| |||||| || Sbjct 1241 CCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 1209 >seq2782 Length=10868 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||| ||||| || || | || || Sbjct 9465 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGGGTACGTCCATCCTCG 9524 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||| ||||| ||||| || |||||||| || || | || ||||||||| Sbjct 9525 AGTTGCTTTCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 9584 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | ||||| | ||||||||||| ||| ||||||||| Sbjct 9585 ATCTTTGTCTTGACGGACTCAATGGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTG 9644 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 ||||| || ||||| || || || Sbjct 9645 CCCGTGAGGGTCTTGACGAAAAT 9667 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| || ||| | || || Sbjct 8841 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCG 8900 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || ||||| || |||||||| || || | || ||||||||| Sbjct 8901 AGCTGCTTGCCGGCAAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 8960 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | |||| | ||| ||||||| |||||| || || Sbjct 8961 ATCTTCGTCTTCACGGACTCAATGGTGTCAGAGCTCTCGACCTCCAAGGTAATGGTTTTA 9020 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 || || || ||||| || || || Sbjct 9021 CCAGTGAGGGTCTTGACGAAAAT 9043 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||| |||||||||||||| || || || |||| || Sbjct 9162 ACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCGTCCTCT 9221 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||| || || || | || |||||||| || || | || ||||||||| Sbjct 9222 AGTTGCTTTCCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 9281 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | | || | ||| ||||||| |||||| ||||| Sbjct 9282 ATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGTCTTA 9341 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 || || || ||||| || || || Sbjct 9342 CCAGTGAGGGTCTTGACGAAAAT 9364 >seq146 Length=178297 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||| ||||||||| | || ||| |||| || Sbjct 157700 ACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCGCTGAGGGTGCGTCCGTCCTCG 157759 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||| ||||| || | ||||||||||| || || | ||||||||||| | Sbjct 157760 AGTTGCTTTCCAGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGA 157819 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||||| || || ||||| Sbjct 157820 ATCTTTGTCTTGACGCTCTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGTCTTT 157879 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCA 45335 || || || || |||||||| || |||| Sbjct 157880 CCAGTGAGTGTTTTCACAAAAATCTGCA 157907 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| ||||||||||||||| || ||| | || || Sbjct 157380 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCG 157439 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| || | || |||||||| || || | ||||||||||| | Sbjct 157440 AGTTGCTTTCCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTGA 157499 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| || || | ||||| |||||| Sbjct 157500 ATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAATAGTCTTG 157559 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTG 45333 || || || ||||| || ||||| || Sbjct 157560 CCAGTGAGGGTCTTAACGAAGATCTG 157585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| || ||| | || || Sbjct 156643 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCT 156702 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| ||||| || |||||||| || || | || ||||||||| Sbjct 156703 AGTTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 156762 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | | || | ||| ||||| | || || ||||| Sbjct 156763 ATCTTGGTCTTGACAGACTCGATGGTATCGGAGCTCTCTACCTCAAGAGTGATGGTCTTT 156822 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTG 45333 || || || ||||| || ||||| || Sbjct 156823 CCAGTGAGGGTCTTGACGAAGATCTG 156848 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || |||||||||||| || ||| | || || Sbjct 157057 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCG 157116 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || ||||| || ||||||||||| || | || ||||||||| Sbjct 157117 AGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTTGTCCTGG 157176 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | |||| | ||| ||||| | || || ||||| Sbjct 157177 ATCTTGGTCTTGACGGACTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTT 157236 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 || || || ||||| || ||||| Sbjct 157237 CCAGTGAGGGTCTTGACGAAGAT 157259 >seq22 Length=338851 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||||||||||| || |||||||||||| || ||| |||| || Sbjct 330913 ACCAAGTGCAAGGTGCTCTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCG 330972 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||| || |||||||| || || | || ||||||||| Sbjct 330973 AGCTGCTTTCCGGCGAAGATCAAGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGG 331032 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | ||| || || | ||| || |||||| Sbjct 331033 ATCTTGGTCTTCACACTCTCGATGGTATCGGAGCTCTCTACTTCGAGGGTGATGGTCTTG 331092 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTG 45333 || |||| |||||||| ||||| || Sbjct 331093 CCAGTCAAGGTCTTCACGAAGATCTG 331118 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| |||||| ||||| ||||||||| || ||| | || || Sbjct 331321 ACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCG 331380 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| || | || |||||||| || || | || |||||||| Sbjct 331381 AGTTGCTTTCCGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGG 331440 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | ||| ||||||| ||| || ||||| Sbjct 331441 ATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAAGGTGATGGTCTTT 331500 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||||||||| Sbjct 331501 CCGGTGAGGGTCTTGACGAAGATTTGCAT 331529 Score = 102 bits (112), Expect = 6e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| ||| ||| | || || Sbjct 331549 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGTCCATCCTCA 331608 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || |||||||| || ||||| |||||||||||||| || | ||||||||||| Sbjct 331609 AGCTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTC 331664 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || |||| | || || Sbjct 331885 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 331944 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || |||||||| || || | || |||||||| Sbjct 331945 AGCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGG 332004 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | ||| ||||||| || || |||||| Sbjct 332005 ATCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAACGTTATAGTCTTG 332064 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTG 45333 || || |||||||| || ||||| || Sbjct 332065 CCAGTGAGAGTCTTGACGAAGATCTG 332090 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||||||||||||||| || | | || || ||||| Sbjct 332225 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTCCTTCCATCCTCGAGTTG 332284 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | || |||||||| || || | |||||||||||| || || Sbjct 332285 CTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTT 332344 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||||| ||||| ||||| || || Sbjct 332345 AGTCTTGACACTCTCGATAGTGTCAGAGCTCTCGACCTCCAAAGTAATGGTCTTTCCTGT 332404 Query 45313 CAGAGTCTTCACAAAGAT 45330 ||||||||||| || || Sbjct 332405 GAGAGTCTTCACGAAAAT 332422 >seq66879 Length=210 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | || | |||||| ||||||||||| || |||||||||||| || Sbjct 67 CCTCCTCTCAAGCGGAGGACAAGGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 126 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| | || |||| || ||||| ||||| ||||| ||||||||||| || || Sbjct 127 AAAGTGCGACCATCCTCCAACTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCAGGGGGG 186 Query 45230 ACACCCTCCTTGTCCGCAATTTT 45252 | || || |||||| |||||| Sbjct 187 ATTCCTTCTTTGTCCTGAATTTT 209 >seq62579 Length=228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 95 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTCC 154 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 155 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394739658558427