Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30]
69,687 sequences; 205,175,886 total letters
Query= NC_003278.1
Length=35580
Score E
Sequences producing significant alignments: (Bits) Value
seq2320 645 0.0
>seq2320
Length=11620
Score = 645 bits (714), Expect = 0.0
Identities = 1542/2310 (67%), Gaps = 104/2310 (5%)
Strand=Plus/Plus
Query 1570 CGGCACCACCCCCATCAGCTGCGGATAGACCCGCAGGCCGGCGAGCTGGTCGTCGCGGCT 1629
|||||| | |||||| |||||||| || || | | |||||| ||||||||| |
Sbjct 7442 CGGCACGATCCCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCGCGCGT 7501
Query 1630 GATGTTCTTGATTGAGCCGAACTCGTCCTTGGCCGCCACCTCGCTGACCGGAATCAGTTG 1689
|| |||||||| | |||||||| || |||| |||||| || ||||| || ||
Sbjct 7502 GACATTCTTGATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTG 7561
Query 1690 GATCCCCTCCTTCTTCCCGTTCGGCGCGTAGACGAACAGGTTGCGGAAATTGCCAGGCCC 1749
||| || || ||||| |||||||||||||| | ||||||||| ||||||||||| |||||
Sbjct 7562 GATACCGTCTTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCC 7621
Query 1750 CTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTCGATGTCTTCCTCATTCTGTGCGGCGTC 1809
||| | | |||| |||| ||||| ||||| || | ||| || || ||
Sbjct 7622 CTTGCTGTTTTTCAACGCCTCGCGCATGTTGTCGACATCGGTTTGCGACTGCGCCGCATC 7681
Query 1810 GGTCATGTAGAGGATGAAGCCGGCGTGGCTGCCGTTGTTGTAGTACTTACGCCGGAACAG 1869
|||||||| ||||| ||||| ||||| || || | ||| ||| || || || ||
Sbjct 7682 CGTCATGTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAG 7741
Query 1870 CGTGGCCGACTCGTTCAGC-AGGGCGCTCTGTAGGGCGCAGAACCACTCCGGCACTCCGT 1928
||| ||||||||||||| | | | ||| || ||||||| || | || |||| || |
Sbjct 7742 CGTCGCCGACTCGTTCAACCATGCCGCG-TGCAGGGCGCCGAGATATTCGGGCAAGCCAT 7800
Query 1929 AGATTTCCTGATTGATGTCGGCCTCGCGCAGTTGGATCACGCTGCCCTTCTCGAATTCGT 1988
| | |||||||| ||||| | || || || |||| | || | |||| ||||
Sbjct 7801 ACACCTCCTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAACTCGT 7860
Query 1989 GCTCATCCTTCCAGCTGCGCACCTGGTAGAACGTCTCCAGATCGGTGCCGCGGCGCATGT 2048
|| ||| ||| | | ||||| ||||| || || || || ||||||||||||
Sbjct 7861 GCGACGCCTGCCACCCGTTGACCTGATAGAAGCGCTGTAGGTCCGTCGCGCGGCGCATGT 7920
Query 2049 ACTTGGCCAGCGGCGCCTGCAGCGGCATCCGCGTACCCAGGCGAGAACGAGGCTGCTCGA 2108
||||||| ||| || | || | | || || || || || |||| |
Sbjct 7921 ACTTGGCTGGCGCACGCTCGAACGCAAGCGGCCCGCCTAGCCGGTTCTTTCGCAGCTCAA 7980
Query 2109 GGTATGCCGAGCCAAATGTCAGCCAGTCCAGGGAGAACTGCTCGAACG--TCGCCCGGCT 2166
| || | ||| || || || | || || | ||| |||||| |||| || |
Sbjct 7981 GATACCCATTGCCGAACGTGAGGAAATCGAGCGCCCACTTATCGAACACTTCGCGCG--T 8038
Query 2167 GAGCAGGCGGTGCGGGATGAAGGTCTTGGCCAGCATGTTGCGCTTGAACTTCAGGCCCGA 2226
||||| | |||||| ||||| ||| | |||| ||| || ||||| | | ||||
Sbjct 8039 GAGCAACCTGTGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGA 8098
Query 2227 CTGCAGATAAACGCTCGACCCCACCGACTTGGCCAGCCCCTCCATAGACAGCGGCGGCTC 2286
||| |||| | | | | || ||||| ||| | |||| |||||||||
Sbjct 8099 GCCGTGATGGACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTC 8158
Query 2287 GTACCACCGCCCGTTCGGCCAGCACTCGAGATAGTCGAGGATGCCCCGGCCGTCGAGCAC 2346
| |||| ||| || ||| |||| ||||| || || | || ||| | ||
Sbjct 8159 GAACCAGTTGCCGGCCGACCACGTTTCGACGTAGTCAAGAATCTCGGCGCGGTCCATTAC 8218
Query 2347 CGGCATCGGATCACCGAAGGTGAAGGCCTCGGCACGGCCACCCTGGCGCGGGATGAACTC 2406
|||| || || |||||||||||||||||||| ||| | |||| | ||
Sbjct 8219 TGGCACCGCGTCGCCGAAGGTGAAGGCCTCGGC--------CCTCG-GCGGCGTCGACGG 8269
Query 2407 GCCTTCCTGGGCGGACTGGACTGTAACTGGCTGCTGGCGGCGGTGGCTGCGACGTTTGCT 2466
| | || || | | ||| || | ||| | |||||| || || || |||||
Sbjct 8270 GGC-----GGCCGCAGTCGACAGTG-CGGGCGGT--GCGGCG-TGCATGTTGCGCTTGCT 8320
Query 2467 CA-TCCGAAAATCTCCATGCGGCCGGTATTCGCGGGGGTCTGCCCCTCGAGCGGCTCGTT 2525
|| | || || |||||| ||||||||| || ||| || || | ||| |||||
Sbjct 8321 CAATTTGAGAA-CTCCATAAAGCCGGTATTGTTGGCGGTGACGCCTTCTAACGGTTCGTT 8379
Query 2526 TTGCAATGCGTGGAATAGCGCCCAGGCCAGATCGGCGTGGCCGGTGTTGTCGTTGCGGCC 2585
| ||||| | ||||||||| || || ||||| || || | ||||| ||||
Sbjct 8380 GCCGAGCGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCGTTACGGCT 8439
Query 2586 GGCGGTATAGGTGAACTGGCGCCCACCGGCCGTGATGGTCTTGCGGATAGCCATCAGCGC 2645
|| ||| |||| | || | ||||| ||||| ||||| || ||||| | ||
Sbjct 8440 CGCTTCATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGA 8499
Query 2646 CTGGGCCAGGTCGGTCCAGCCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACCA 2705
|| || | ||| ||||| ||||| ||||||||||| ||||| || |||||| ||| |
Sbjct 8500 TTGCGCTAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGATCACCGACAA 8559
Query 2706 GGCCTTCATGACCAACTGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGCGCACCCC--- 2762
| | || | |||| | ||| || || ||||| ||| ||| | ||| ||| |
Sbjct 8560 GCCTTTGAGCACCAGGCGGCCCTTAACTTCTGGCGAATAGTTGA--GCGCG-ACCGCGTT 8616
Query 2763 CGGGAAGAACTGGCGCACCAGCTGCGCGACGCCAGAGCCCATGCCGGTGGTGTCGA-CGC 2821
||| ||||||| | || ||||| |||||| ||| ||||| || || |||| |||
Sbjct 8617 CGGATAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCGTATCGATCGC 8676
Query 2822 CGATGTAGGTGACCCAGTAGCGCTGGGTCACCTTGCGGATGAACTCGGCCTGTTCGGCGA 2881
| || |||| ||| ||| |||| || | | ||| || |||||||||| | |||
Sbjct 8677 C-ATATAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCTGTGCCTCGA 8735
Query 2882 AGTCCTTGCCGCGGAATTGATGGCGCTC---CAGCACGCGGAACTTGCCGCCCGGTACCG 2938
| ||| ||||||| |||| || || ||||||||| |||||||| || || ||||
Sbjct 8736 AATCCATGCCGCGCCATTG---GCACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCG 8792
Query 2939 CCGGAGGCGCCACCACCACCAGACCCGCGGTGTCGCCCGTCTCGGCGGGGTCATAGCCCA 2998
|||| || || || || || || || | ||| |||| || ||||||||||| |
Sbjct 8793 CCGGCGGTGCGACGACGCTCAAGCCGGCCGAGTCACCCGATAGCGCTGGGTCATAGCCGA 8852
Query 2999 GCCACACCTGGCGATCACCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACA 3058
||||| | |||||| ||||| || ||
Sbjct 8853 CCCACAGCGGGCGATAGCCGAAAGGGCG-------------------------------- 8880
Query 3059 GGTCCCAGCTATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGT 3118
|| || |||||||||||| |||| | | | ||||||||| ||| |
Sbjct 8881 GG-----GCAATCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTGTAT 8935
Query 3119 CGTCGACGAACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCA 3178
|||||| ||||||||||||| ||| || | | ||| ||| ||| || ||||| |
Sbjct 8936 CGTCGATAAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTA 8995
Query 3179 GCTCGTCGATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCT 3238
||||| |||| |||||||| ||||| || | ||| ||||||| || ||| |||||||
Sbjct 8996 GCTCGCCGATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCT 9055
Query 3239 GGCGCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTGCAGGGCGTCATGAC--TTACGTC 3296
||||||| | |||||||| || || || || | | ||| | || |||||||
Sbjct 9056 GGCGCCATTGCCTATCCTCGCAGAGACGGCC--GCCGGCGAGCGCCTTGCGCGTTACGTC 9113
Query 3297 GATCTTGATGC-GATCGGCGGCCG--GCTTGCCCTTG-TTGAAGCGCTCGCCAGTCCAGA 3352
| ||||| ||| || || || | ||| | |||||| |||||||| ||||||
Sbjct 9114 CA----GATGCAGATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGA 9169
Query 3353 ATGTGTAGGCCTCATGCGCCAT---CGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGC 3409
| || ||||| |||| | || ||| ||||| ||||| ||||| | |
Sbjct 9170 AGGTATAGGCGGCATGTCCAATGCTCGAC---GGCGTGGAGAAATAGGTTTTTCTCCATT 9226
Query 3410 GCTTC-TGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAG 3468
|| ||||||||||| || |||||||| |||||||| || | |||||
Sbjct 9227 TTTTTGTGCATCGCCATGCCCGACGCGACCTTATTCAGCTCGCGAAATCCGCCAGTCCAA 9286
Query 3469 AAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCG 3528
||| | |||||||| ||||| |||||||| |||| ||| || || |||||||| |||||
Sbjct 9287 AAGTATTCGTCGAAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCT 9346
Query 3529 AGGAAGTGCAATTCCGCGCCGTTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGACACCT 3588
|| ||| | || ||| | ||||||| ||||||||||||||| | || |||||| |
Sbjct 9347 AGAAAGCGTAACGTCGCCTCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACATCG 9406
Query 3589 ACCGCATCGCGCGCGAAGGCCTGG---ATATACGCCTTGAAGATGTGCGCTTGGGCCTTG 3645
| || |||||||| || |||| || ||| | |||| | |||||| || ||||||
Sbjct 9407 GCGGCCTCGCGCGCAAA---CTGGCAAATGTACTGCGTGAAAACGTGCGCGTGTGCCTTG 9463
Query 3646 CTGGCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCGCGG 3705
||||||||||| || ||||| | ||| || || | ||||||| ||| ||||| ||
Sbjct 9464 CTGGCCGACAGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGT 9523
Query 3706 GCGAAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACGCGGGTTCGCTGATTA 3765
||||| || |||| |||||||||||||||||||||||||| ||| || |||||||
Sbjct 9524 GCGAAATACCACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCGCGTGCGCTGATGC 9583
Query 3766 CCCGCGCGGTACCAGTCTTTCTGGTAGTCGAAGCAAC-CGTCGAGGAAGGCCTCGACCAG 3824
|| || |||||| | || || |||||||| || | || || ||||||||| ||
Sbjct 9584 CCTTGCCGATACCAGACCTTTTGATAGTCGAA-CAGCGAATCAAGAAAGGCCTCGCGAAG 9642
Query 3825 TTTCTCGGTCAGTTCCTCACTGATGTCGTT 3854
||||| | | || || |||| |||||
Sbjct 9643 CCGCTCGGCCTGCTCGTCGCTGAACTCGTT 9672
Score = 107 bits (118), Expect = 4e-19
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 22580 GACGGGCTGCTCGCGATCCCCCCGCGCGGCGCCGTGCTGCACCTCTGGCTGGGCTGGAGT 22639
||||| | ||| ||||||||| ||||||||||||||||| | | | | | ||||||
Sbjct 9740 GACGGCCGGCTTGCGATCCCCGAGCGCGGCGCCGTGCTGCGCGTGTCGTTCGGCTGGTCC 9799
Query 22640 GACAGCGGACTGGTCGACAAGGGCACCTACACCGTCGACGAAACCGAGCACAGCGGCGCG 22699
|| | ||| | |||||||||||| ||| ||||||||||| |||||||||||||
Sbjct 9800 GATACCGGCGTCGTCGACAAGGGCGCCTTTACCGTCGACGAGGTAGAGCACAGCGGCGGC 9859
Query 22700 CCGGACGTGCTCAGCATCCGCGCCCGCTCAGC 22731
|||| | |||| ||| || || ||||| ||
Sbjct 9860 GCGGATATCCTCACCATTCGGGCGCGCTCGGC 9891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113640281016548
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