Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq2320 645 0.0 >seq2320 Length=11620 Score = 645 bits (714), Expect = 0.0 Identities = 1542/2310 (67%), Gaps = 104/2310 (5%) Strand=Plus/Plus Query 1570 CGGCACCACCCCCATCAGCTGCGGATAGACCCGCAGGCCGGCGAGCTGGTCGTCGCGGCT 1629 |||||| | |||||| |||||||| || || | | |||||| ||||||||| | Sbjct 7442 CGGCACGATCCCCATGAGCTGCGGGGGGATGCGATGCGCCGCGAGCAAGTCGTCGCGCGT 7501 Query 1630 GATGTTCTTGATTGAGCCGAACTCGTCCTTGGCCGCCACCTCGCTGACCGGAATCAGTTG 1689 || |||||||| | |||||||| || |||| |||||| || ||||| || || Sbjct 7502 GACATTCTTGATATTGAAAAACTCGTCTTTCGCCGTGACCTCGGAAACGGGAATGAGCTG 7561 Query 1690 GATCCCCTCCTTCTTCCCGTTCGGCGCGTAGACGAACAGGTTGCGGAAATTGCCAGGCCC 1749 ||| || || ||||| |||||||||||||| | ||||||||| ||||||||||| ||||| Sbjct 7562 GATACCGTCTTTCTTGCCGTTCGGCGCGTACATGAACAGGTTTCGGAAATTGCCTGGCCC 7621 Query 1750 CTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTCGATGTCTTCCTCATTCTGTGCGGCGTC 1809 ||| | | |||| |||| ||||| ||||| || | ||| || || || Sbjct 7622 CTTGCTGTTTTTCAACGCCTCGCGCATGTTGTCGACATCGGTTTGCGACTGCGCCGCATC 7681 Query 1810 GGTCATGTAGAGGATGAAGCCGGCGTGGCTGCCGTTGTTGTAGTACTTACGCCGGAACAG 1869 |||||||| ||||| ||||| ||||| || || | ||| ||| || || || || Sbjct 7682 CGTCATGTACAGGATAAAGCCCGCGTGCGAACCATTCTCGTAATACCGCCGGCGAAATAG 7741 Query 1870 CGTGGCCGACTCGTTCAGC-AGGGCGCTCTGTAGGGCGCAGAACCACTCCGGCACTCCGT 1928 ||| ||||||||||||| | | | ||| || ||||||| || | || |||| || | Sbjct 7742 CGTCGCCGACTCGTTCAACCATGCCGCG-TGCAGGGCGCCGAGATATTCGGGCAAGCCAT 7800 Query 1929 AGATTTCCTGATTGATGTCGGCCTCGCGCAGTTGGATCACGCTGCCCTTCTCGAATTCGT 1988 | | |||||||| ||||| | || || || |||| | || | |||| |||| Sbjct 7801 ACACCTCCTGATTAATGTCCGGTTCCATCAAGTGATGCACGGTCCCGGCCGCGAACTCGT 7860 Query 1989 GCTCATCCTTCCAGCTGCGCACCTGGTAGAACGTCTCCAGATCGGTGCCGCGGCGCATGT 2048 || ||| ||| | | ||||| ||||| || || || || |||||||||||| Sbjct 7861 GCGACGCCTGCCACCCGTTGACCTGATAGAAGCGCTGTAGGTCCGTCGCGCGGCGCATGT 7920 Query 2049 ACTTGGCCAGCGGCGCCTGCAGCGGCATCCGCGTACCCAGGCGAGAACGAGGCTGCTCGA 2108 ||||||| ||| || | || | | || || || || || |||| | Sbjct 7921 ACTTGGCTGGCGCACGCTCGAACGCAAGCGGCCCGCCTAGCCGGTTCTTTCGCAGCTCAA 7980 Query 2109 GGTATGCCGAGCCAAATGTCAGCCAGTCCAGGGAGAACTGCTCGAACG--TCGCCCGGCT 2166 | || | ||| || || || | || || | ||| |||||| |||| || | Sbjct 7981 GATACCCATTGCCGAACGTGAGGAAATCGAGCGCCCACTTATCGAACACTTCGCGCG--T 8038 Query 2167 GAGCAGGCGGTGCGGGATGAAGGTCTTGGCCAGCATGTTGCGCTTGAACTTCAGGCCCGA 2226 ||||| | |||||| ||||| ||| | |||| ||| || ||||| | | |||| Sbjct 8039 GAGCAACCTGTGCGGAATGAACGTCGCCGATAGCACGTTACGTTTGAAGTAGATCGCCGA 8098 Query 2227 CTGCAGATAAACGCTCGACCCCACCGACTTGGCCAGCCCCTCCATAGACAGCGGCGGCTC 2286 ||| |||| | | | | || ||||| ||| | |||| ||||||||| Sbjct 8099 GCCGTGATGGACGCCGGCGCGGAATGTTTTAGCCAGGCCCGACCACGACACCGGCGGCTC 8158 Query 2287 GTACCACCGCCCGTTCGGCCAGCACTCGAGATAGTCGAGGATGCCCCGGCCGTCGAGCAC 2346 | |||| ||| || ||| |||| ||||| || || | || ||| | || Sbjct 8159 GAACCAGTTGCCGGCCGACCACGTTTCGACGTAGTCAAGAATCTCGGCGCGGTCCATTAC 8218 Query 2347 CGGCATCGGATCACCGAAGGTGAAGGCCTCGGCACGGCCACCCTGGCGCGGGATGAACTC 2406 |||| || || |||||||||||||||||||| ||| | |||| | || Sbjct 8219 TGGCACCGCGTCGCCGAAGGTGAAGGCCTCGGC--------CCTCG-GCGGCGTCGACGG 8269 Query 2407 GCCTTCCTGGGCGGACTGGACTGTAACTGGCTGCTGGCGGCGGTGGCTGCGACGTTTGCT 2466 | | || || | | ||| || | ||| | |||||| || || || ||||| Sbjct 8270 GGC-----GGCCGCAGTCGACAGTG-CGGGCGGT--GCGGCG-TGCATGTTGCGCTTGCT 8320 Query 2467 CA-TCCGAAAATCTCCATGCGGCCGGTATTCGCGGGGGTCTGCCCCTCGAGCGGCTCGTT 2525 || | || || |||||| ||||||||| || ||| || || | ||| ||||| Sbjct 8321 CAATTTGAGAA-CTCCATAAAGCCGGTATTGTTGGCGGTGACGCCTTCTAACGGTTCGTT 8379 Query 2526 TTGCAATGCGTGGAATAGCGCCCAGGCCAGATCGGCGTGGCCGGTGTTGTCGTTGCGGCC 2585 | ||||| | ||||||||| || || ||||| || || | ||||| |||| Sbjct 8380 GCCGAGCGCGTGCAGGCACGCCCAGGCAAGGTCCGCGTGTCCTGTTTGCTCGTTACGGCT 8439 Query 2586 GGCGGTATAGGTGAACTGGCGCCCACCGGCCGTGATGGTCTTGCGGATAGCCATCAGCGC 2645 || ||| |||| | || | ||||| ||||| ||||| || ||||| | || Sbjct 8440 CGCTTCATAAGTGACTTTCTTTCCGCTCGCCGTCATGGTTTTGCGAATCGCCATGAACGA 8499 Query 2646 CTGGGCCAGGTCGGTCCAGCCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACCA 2705 || || | ||| ||||| ||||| ||||||||||| ||||| || |||||| ||| | Sbjct 8500 TTGCGCTAAGTCTGTCCATCCGGCATCGAATTCGAGCCGGCCCTTACCGATCACCGACAA 8559 Query 2706 GGCCTTCATGACCAACTGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGCGCACCCC--- 2762 | | || | |||| | ||| || || ||||| ||| ||| | ||| ||| | Sbjct 8560 GCCTTTGAGCACCAGGCGGCCCTTAACTTCTGGCGAATAGTTGA--GCGCG-ACCGCGTT 8616 Query 2763 CGGGAAGAACTGGCGCACCAGCTGCGCGACGCCAGAGCCCATGCCGGTGGTGTCGA-CGC 2821 ||| ||||||| | || ||||| |||||| ||| ||||| || || |||| ||| Sbjct 8617 CGGATAGAACTGCCTGACGAGCTGATAGACGCCCTGGCCGATGCCTGTCGTATCGATCGC 8676 Query 2822 CGATGTAGGTGACCCAGTAGCGCTGGGTCACCTTGCGGATGAACTCGGCCTGTTCGGCGA 2881 | || |||| ||| ||| |||| || | | ||| || |||||||||| | ||| Sbjct 8677 C-ATATAGGCGACGTTGTATTGCTGCGTGATCGCGCGTATCGCCTCGGCCTGTGCCTCGA 8735 Query 2882 AGTCCTTGCCGCGGAATTGATGGCGCTC---CAGCACGCGGAACTTGCCGCCCGGTACCG 2938 | ||| ||||||| |||| || || ||||||||| |||||||| || || |||| Sbjct 8736 AATCCATGCCGCGCCATTG---GCACTTGTGCAGCACGCGAAACTTGCCCCCAGGCACCG 8792 Query 2939 CCGGAGGCGCCACCACCACCAGACCCGCGGTGTCGCCCGTCTCGGCGGGGTCATAGCCCA 2998 |||| || || || || || || || | ||| |||| || ||||||||||| | Sbjct 8793 CCGGCGGTGCGACGACGCTCAAGCCGGCCGAGTCACCCGATAGCGCTGGGTCATAGCCGA 8852 Query 2999 GCCACACCTGGCGATCACCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACA 3058 ||||| | |||||| ||||| || || Sbjct 8853 CCCACAGCGGGCGATAGCCGAAAGGGCG-------------------------------- 8880 Query 3059 GGTCCCAGCTATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGT 3118 || || |||||||||||| |||| | | | ||||||||| ||| | Sbjct 8881 GG-----GCAATCGACCATGCAACGCTGTAAATCCGCGAGCGGGAAAATCGACGCTGTAT 8935 Query 3119 CGTCGACGAACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCA 3178 |||||| ||||||||||||| ||| || | | ||| ||| ||| || ||||| | Sbjct 8936 CGTCGATAAACTGGCACATCAACAGATTGGCGTATTCCTGCGCGCTGTATTCAAGACGTA 8995 Query 3179 GCTCGTCGATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCT 3238 ||||| |||| |||||||| ||||| || | ||| ||||||| || ||| ||||||| Sbjct 8996 GCTCGCCGATATCGAACAGGTCGCACCCGCCGGCGACGGCATCCTCGACGGTCACGATCT 9055 Query 3239 GGCGCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTGCAGGGCGTCATGAC--TTACGTC 3296 ||||||| | |||||||| || || || || | | ||| | || ||||||| Sbjct 9056 GGCGCCATTGCCTATCCTCGCAGAGACGGCC--GCCGGCGAGCGCCTTGCGCGTTACGTC 9113 Query 3297 GATCTTGATGC-GATCGGCGGCCG--GCTTGCCCTTG-TTGAAGCGCTCGCCAGTCCAGA 3352 | ||||| ||| || || || | ||| | |||||| |||||||| |||||| Sbjct 9114 CA----GATGCAGATGATCGACCTTTGCGCGGCCTCGGTTGAAGTGCTCGCCACTCCAGA 9169 Query 3353 ATGTGTAGGCCTCATGCGCCAT---CGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGC 3409 | || ||||| |||| | || ||| ||||| ||||| ||||| | | Sbjct 9170 AGGTATAGGCGGCATGTCCAATGCTCGAC---GGCGTGGAGAAATAGGTTTTTCTCCATT 9226 Query 3410 GCTTC-TGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAG 3468 || ||||||||||| || |||||||| |||||||| || | ||||| Sbjct 9227 TTTTTGTGCATCGCCATGCCCGACGCGACCTTATTCAGCTCGCGAAATCCGCCAGTCCAA 9286 Query 3469 AAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCG 3528 ||| | |||||||| ||||| |||||||| |||| ||| || || |||||||| ||||| Sbjct 9287 AAGTATTCGTCGAAATAGAAATTGCCGTGATAGCTCTGTGCGGTGCGCGCGTTCGTGCCT 9346 Query 3529 AGGAAGTGCAATTCCGCGCCGTTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGACACCT 3588 || ||| | || ||| | ||||||| ||||||||||||||| | || |||||| | Sbjct 9347 AGAAAGCGTAACGTCGCCTCATTCGGCAAGATGATCGGGTCGCCTGTTAGCTCGACATCG 9406 Query 3589 ACCGCATCGCGCGCGAAGGCCTGG---ATATACGCCTTGAAGATGTGCGCTTGGGCCTTG 3645 | || |||||||| || |||| || ||| | |||| | |||||| || |||||| Sbjct 9407 GCGGCCTCGCGCGCAAA---CTGGCAAATGTACTGCGTGAAAACGTGCGCGTGTGCCTTG 9463 Query 3646 CTGGCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCGCGG 3705 ||||||||||| || ||||| | ||| || || | ||||||| ||| ||||| || Sbjct 9464 CTGGCCGACAGAAAAATCTGATCGCGGCCGGTCGTGATCGCGTCGTCCAGTGCCTCTCGT 9523 Query 3706 GCGAAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACGCGGGTTCGCTGATTA 3765 ||||| || |||| |||||||||||||||||||||||||| ||| || ||||||| Sbjct 9524 GCGAAATACCACGTCGCGCCGATCTGCCGCGACTTGAGAATGTTGCGCGTGCGCTGATGC 9583 Query 3766 CCCGCGCGGTACCAGTCTTTCTGGTAGTCGAAGCAAC-CGTCGAGGAAGGCCTCGACCAG 3824 || || |||||| | || || |||||||| || | || || ||||||||| || Sbjct 9584 CCTTGCCGATACCAGACCTTTTGATAGTCGAA-CAGCGAATCAAGAAAGGCCTCGCGAAG 9642 Query 3825 TTTCTCGGTCAGTTCCTCACTGATGTCGTT 3854 ||||| | | || || |||| ||||| Sbjct 9643 CCGCTCGGCCTGCTCGTCGCTGAACTCGTT 9672 Score = 107 bits (118), Expect = 4e-19 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 22580 GACGGGCTGCTCGCGATCCCCCCGCGCGGCGCCGTGCTGCACCTCTGGCTGGGCTGGAGT 22639 ||||| | ||| ||||||||| ||||||||||||||||| | | | | | |||||| Sbjct 9740 GACGGCCGGCTTGCGATCCCCGAGCGCGGCGCCGTGCTGCGCGTGTCGTTCGGCTGGTCC 9799 Query 22640 GACAGCGGACTGGTCGACAAGGGCACCTACACCGTCGACGAAACCGAGCACAGCGGCGCG 22699 || | ||| | |||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 9800 GATACCGGCGTCGTCGACAAGGGCGCCTTTACCGTCGACGAGGTAGAGCACAGCGGCGGC 9859 Query 22700 CCGGACGTGCTCAGCATCCGCGCCCGCTCAGC 22731 |||| | |||| ||| || || ||||| || Sbjct 9860 GCGGATATCCTCACCATTCGGGCGCGCTCGGC 9891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113640281016548